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LOC118102609 carbohydrate sulfotransferase 12-like [ Hippoglossus stenolepis (Pacific halibut) ]

Gene ID: 118102609, updated on 23-Oct-2023

Summary

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Gene symbol
LOC118102609
Gene description
carbohydrate sulfotransferase 12-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Hippoglossus stenolepis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Pleuronectidae; Hippoglossus
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Genomic context

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See LOC118102609 in Genome Data Viewer
Location:
chromosome: 23
Exon count:
5
Annotation release Status Assembly Chr Location
101 current HSTE1.2 (GCF_022539355.2) 23 NC_061505.1 (10745676..10747822, complement)
100 previous assembly IPHC_HiSten_1.0 (GCF_013339905.1) 23 NC_048949.1 (10451735..10453881, complement)

Chromosome 23 - NC_061505.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC118102611 Neighboring gene sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4F Neighboring gene carbohydrate sulfotransferase 12 Neighboring gene carbohydrate sulfotransferase 12-like Neighboring gene synaptotagmin IV

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteoglycan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
carbohydrate sulfotransferase 12-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Hippoglossus stenolepis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HSTE1.2 Primary Assembly

Genomic

  1. NC_061505.1 Reference HSTE1.2 Primary Assembly

    Range
    10745676..10747822 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035148916.1 → XP_035004807.1  carbohydrate sulfotransferase 12-like

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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