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syt1a synaptotagmin Ia [ Hippoglossus stenolepis (Pacific halibut) ]

Gene ID: 118101853, updated on 12-Sep-2024

Summary

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Gene symbol
syt1a
Gene description
synaptotagmin Ia
Locus tag
HST_G00217120
See related
EnsemblRapid:ENSHSTG00010010406
Gene type
protein coding
RefSeq status
MODEL
Organism
Hippoglossus stenolepis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Pleuronectidae; Hippoglossus
Orthologs
zebrafish all
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Genomic context

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See syt1a in Genome Data Viewer
Location:
chromosome: 22
Exon count:
14
Annotation release Status Assembly Chr Location
101 current HSTE1.2 (GCF_022539355.2) 22 NC_061504.1 (15365331..15490575)
100 previous assembly IPHC_HiSten_1.0 (GCF_013339905.1) 22 NC_048948.1 (14994183..15122628)

Chromosome 22 - NC_061504.1Genomic Context describing neighboring genes Neighboring gene protein phosphatase 1, regulatory subunit 12A Neighboring gene PRKC, apoptosis, WT1, regulator Neighboring gene NADH-cytochrome b5 reductase 3 Neighboring gene liprin-beta-1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium-dependent phospholipid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables clathrin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phosphatidylserine binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables syntaxin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in calcium ion-regulated exocytosis of neurotransmitter IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cellular response to calcium ion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of calcium ion-dependent exocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of dopamine secretion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in synaptic vesicle endocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in axon IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in dense core granule IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in synaptic vesicle membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
synaptotagmin-1a

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Hippoglossus stenolepis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HSTE1.2 Primary Assembly

Genomic

  1. NC_061504.1 Reference HSTE1.2 Primary Assembly

    Range
    15365331..15490575
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035147876.2 → XP_035003767.1  synaptotagmin-1a isoform X1

    Related
    ENSHSTP00010024984.1, ENSHSTT00010027129.1
    Conserved Domains (3) summary
    cd08385
    Location:142 → 265
    C2A_Synaptotagmin-1-5-6-9-10; C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10
    cd08402
    Location:274 → 409
    C2B_Synaptotagmin-1; C2 domain second repeat present in Synaptotagmin 1
    cd21963
    Location:26 → 115
    Syt1_N; N-terminal domain of synaptotagmin-1 (Syt1) and similar proteins

  2. XM_035147880.2 → XP_035003771.1  synaptotagmin-1a isoform X2

    Conserved Domains (3) summary
    cd08385
    Location:139 → 262
    C2A_Synaptotagmin-1-5-6-9-10; C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10
    cd08402
    Location:271 → 406
    C2B_Synaptotagmin-1; C2 domain second repeat present in Synaptotagmin 1
    cd21963
    Location:26 → 115
    Syt1_N; N-terminal domain of synaptotagmin-1 (Syt1) and similar proteins

  3. XM_035147877.2 → XP_035003768.1  synaptotagmin-1a isoform X1

    Conserved Domains (3) summary
    cd08385
    Location:142 → 265
    C2A_Synaptotagmin-1-5-6-9-10; C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10
    cd08402
    Location:274 → 409
    C2B_Synaptotagmin-1; C2 domain second repeat present in Synaptotagmin 1
    cd21963
    Location:26 → 115
    Syt1_N; N-terminal domain of synaptotagmin-1 (Syt1) and similar proteins

  4. XM_035147879.2 → XP_035003770.1  synaptotagmin-1a isoform X1

    Related
    ENSHSTP00010024973.1, ENSHSTT00010027118.1
    Conserved Domains (3) summary
    cd08385
    Location:142 → 265
    C2A_Synaptotagmin-1-5-6-9-10; C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10
    cd08402
    Location:274 → 409
    C2B_Synaptotagmin-1; C2 domain second repeat present in Synaptotagmin 1
    cd21963
    Location:26 → 115
    Syt1_N; N-terminal domain of synaptotagmin-1 (Syt1) and similar proteins
Nucleotide Protein
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