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tmtc2a transmembrane O-mannosyltransferase targeting cadherins 2a [ Hippoglossus stenolepis (Pacific halibut) ]

Gene ID: 118101346, updated on 8-May-2024

Summary

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Gene symbol
tmtc2a
Gene description
transmembrane O-mannosyltransferase targeting cadherins 2a
Locus tag
HST_G00216070
See related
EnsemblRapid:ENSHSTG00010022249
Gene type
protein coding
RefSeq status
MODEL
Organism
Hippoglossus stenolepis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Pleuronectidae; Hippoglossus
Orthologs
zebrafish all
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Genomic context

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See tmtc2a in Genome Data Viewer
Location:
chromosome: 22
Exon count:
12
Annotation release Status Assembly Chr Location
101 current HSTE1.2 (GCF_022539355.2) 22 NC_061504.1 (12581529..12635843, complement)
100 previous assembly IPHC_HiSten_1.0 (GCF_013339905.1) 22 NC_048948.1 (12202519..12256883, complement)

Chromosome 22 - NC_061504.1Genomic Context describing neighboring genes Neighboring gene sodium- and chloride-dependent GABA transporter 1 Neighboring gene sodium- and chloride-dependent betaine transporter Neighboring gene protein mono-ADP-ribosyltransferase PARP11 Neighboring gene methyltransferase like 25 Neighboring gene calcium release activated channel regulator 2Ab Neighboring gene coiled-coil domain containing 59 Neighboring gene protein arginine N-methyltransferase 8-B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein O-linked mannosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein O-mannosyl-transferase TMTC2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Hippoglossus stenolepis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HSTE1.2 Primary Assembly

Genomic

  1. NC_061504.1 Reference HSTE1.2 Primary Assembly

    Range
    12581529..12635843 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035147019.2 → XP_035002910.2  protein O-mannosyl-transferase TMTC2

    Related
    ENSHSTP00010058941.1, ENSHSTT00010062779.1

RNA

  1. XR_004694521.2 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases