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socs2 suppressor of cytokine signaling 2 [ Hippoglossus stenolepis (Pacific halibut) ]

Gene ID: 118101316, updated on 8-May-2024

Summary

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Gene symbol
socs2
Gene description
suppressor of cytokine signaling 2
Locus tag
HST_G00218530
See related
EnsemblRapid:ENSHSTG00010003844
Gene type
protein coding
RefSeq status
MODEL
Organism
Hippoglossus stenolepis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Pleuronectidae; Hippoglossus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 22
Exon count:
3
Annotation release Status Assembly Chr Location
101 current HSTE1.2 (GCF_022539355.2) 22 NC_061504.1 (18355336..18360312)
100 previous assembly IPHC_HiSten_1.0 (GCF_013339905.1) 22 NC_048948.1 (18023004..18028133)

Chromosome 22 - NC_061504.1Genomic Context describing neighboring genes Neighboring gene EGFR pathway substrate 8a, signaling adaptor Neighboring gene protein tyrosine phosphatase receptor type O Neighboring gene CASP2 and RIPK1 domain containing adaptor with death domain Neighboring gene non-SMC condensin II complex, subunit H2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 1-phosphatidylinositol-3-kinase regulator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intracellular signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in phosphatidylinositol phosphate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of phosphatidylinositol 3-kinase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
suppressor of cytokine signaling 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Hippoglossus stenolepis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HSTE1.2 Primary Assembly

Genomic

  1. NC_061504.1 Reference HSTE1.2 Primary Assembly

    Range
    18355336..18360312
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035146959.2 → XP_035002850.1  suppressor of cytokine signaling 2

    Related
    ENSHSTP00010010268.1, ENSHSTT00010010559.1
    Conserved Domains (2) summary
    cd03736
    Location:160 → 200
    SOCS_SOCS2; SOCS (suppressors of cytokine signaling) box of SOCS2-like proteins. Together with CIS1, the CIS/SOCS family of proteins is characterized by the presence of a C-terminal SOCS box and a central SH2 domain. SOCS2 has recently been shown to regulate ...
    cl15255
    Location:36 → 135
    SH2; Src homology 2 (SH2) domain
Nucleotide Protein
Heading Accession and Version

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