U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC118100795 suppressor of cytokine signaling 3 [ Hippoglossus stenolepis (Pacific halibut) ]

Gene ID: 118100795, updated on 8-May-2024

Summary

Go to the top of the page Help
Gene symbol
LOC118100795
Gene description
suppressor of cytokine signaling 3
Locus tag
HST_G00206380
See related
EnsemblRapid:ENSHSTG00010021331
Gene type
protein coding
RefSeq status
MODEL
Organism
Hippoglossus stenolepis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Pleuronectidae; Hippoglossus
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC118100795 in Genome Data Viewer
Location:
chromosome: 21
Exon count:
3
Annotation release Status Assembly Chr Location
101 current HSTE1.2 (GCF_022539355.2) 21 NC_061503.1 (10737527..10740476)
100 previous assembly IPHC_HiSten_1.0 (GCF_013339905.1) 21 NC_048947.1 (10684438..10688662)

Chromosome 21 - NC_061503.1Genomic Context describing neighboring genes Neighboring gene cytohesin-1 Neighboring gene CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, mitochondrial Neighboring gene probable low-specificity L-threonine aldolase 2 Neighboring gene probable low-specificity L-threonine aldolase 2

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 1-phosphatidylinositol-3-kinase regulator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intracellular signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in phosphatidylinositol phosphate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of phosphatidylinositol 3-kinase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
suppressor of cytokine signaling 3

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Hippoglossus stenolepis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HSTE1.2 Primary Assembly

Genomic

  1. NC_061503.1 Reference HSTE1.2 Primary Assembly

    Range
    10737527..10740476
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035146207.2 → XP_035002098.1  suppressor of cytokine signaling 3

    Related
    ENSHSTP00010056350.1, ENSHSTT00010059997.1
    Conserved Domains (2) summary
    cl02533
    Location:184 → 225
    SOCS; SOCS (suppressors of cytokine signaling) box. The SOCS box is found in the C-terminal region of CIS/SOCS family proteins (in combination with a SH2 domain), ASBs (ankyrin repeat-containing proteins with a SOCS box), SSBs (SPRY domain-containing proteins ...
    cl15255
    Location:47 → 138
    SH2; Src homology 2 (SH2) domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases