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sgca sarcoglycan, alpha [ Hippoglossus stenolepis (Pacific halibut) ]

Gene ID: 118100707, updated on 8-May-2024

Summary

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Gene symbol
sgca
Gene description
sarcoglycan, alpha
Locus tag
HST_G00208820
See related
EnsemblRapid:ENSHSTG00010011941
Gene type
protein coding
RefSeq status
MODEL
Organism
Hippoglossus stenolepis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Pleuronectidae; Hippoglossus
Orthologs
zebrafish all
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Genomic context

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See sgca in Genome Data Viewer
Location:
chromosome: 21
Exon count:
11
Annotation release Status Assembly Chr Location
101 current HSTE1.2 (GCF_022539355.2) 21 NC_061503.1 (16262153..16266427, complement)
100 previous assembly IPHC_HiSten_1.0 (GCF_013339905.1) 21 NC_048947.1 (16154364..16158568, complement)

Chromosome 21 - NC_061503.1Genomic Context describing neighboring genes Neighboring gene inactive all-trans-retinol 13,14-reductase Neighboring gene collagen, type I, alpha 1b Neighboring gene protein phosphatase 1, regulatory subunit 9Bb Neighboring gene histone-lysine N-methyltransferase PRDM9-like Neighboring gene transfer RNA glycine (anticodon CCC)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-sarcoglycan

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Hippoglossus stenolepis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HSTE1.2 Primary Assembly

Genomic

  1. NC_061503.1 Reference HSTE1.2 Primary Assembly

    Range
    16262153..16266427 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035146054.2 → XP_035001945.1  alpha-sarcoglycan

    Related
    ENSHSTP00010029568.1, ENSHSTT00010031842.1
    Conserved Domains (1) summary
    pfam05510
    Location:8 → 376
    Sarcoglycan_2; Sarcoglycan alpha/epsilon
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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