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TMEM199 transmembrane protein 199 [ Zootoca vivipara (common lizard) ]

Gene ID: 118096923, updated on 20-Mar-2024

Summary

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Gene symbol
TMEM199
Gene description
transmembrane protein 199
See related
EnsemblRapid:ENSZVIG00000020772
Gene type
protein coding
RefSeq status
MODEL
Organism
Zootoca vivipara
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Laterata; Lacertibaenia; Lacertidae; Zootoca
Orthologs
human mouse all
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Genomic context

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See TMEM199 in Genome Data Viewer
Location:
chromosome: 15
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2023_10 current rZooViv1.1 (GCF_963506605.1) 15 NC_083290.1 (686526..694060)
100 previous assembly UG_Zviv_1 (GCF_011800845.1) Linkage Group LG15 NC_048619.1 (738026..745589)

Chromosome 15 - NC_083290.1Genomic Context describing neighboring genes Neighboring gene HIC ZBTB transcriptional repressor 1 Neighboring gene SMG6 nonsense mediated mRNA decay factor Neighboring gene DNA polymerase delta interacting protein 2 Neighboring gene SEBOX homeobox Neighboring gene vitronectin

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in vacuolar proton-transporting V-type ATPase complex assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endomembrane system IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transmembrane protein 199

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_963506605.1-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rZooViv1.1

Genomic

  1. NC_083290.1 Reference rZooViv1.1

    Range
    686526..694060
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035139331.2 → XP_034995222.1  transmembrane protein 199 isoform X1

    Related
    ENSZVIP00000028737.1
    Conserved Domains (1) summary
    pfam11712
    Location:72 → 164
    Vma12; Endoplasmic reticulum-based factor for assembly of V-ATPase

  2. XM_035139332.2 → XP_034995223.1  transmembrane protein 199 isoform X2

    Conserved Domains (1) summary
    pfam11712
    Location:72 → 136
    Vma12; Endoplasmic reticulum-based factor for assembly of V-ATPase
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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