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PAFAH1B1 platelet activating factor acetylhydrolase 1b regulatory subunit 1 [ Zootoca vivipara (common lizard) ]

Gene ID: 118096790, updated on 20-Mar-2024

Summary

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Gene symbol
PAFAH1B1
Gene description
platelet activating factor acetylhydrolase 1b regulatory subunit 1
See related
EnsemblRapid:ENSZVIG00000014782
Gene type
protein coding
RefSeq status
MODEL
Organism
Zootoca vivipara
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Laterata; Lacertibaenia; Lacertidae; Zootoca
Orthologs
human mouse all
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Genomic context

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See PAFAH1B1 in Genome Data Viewer
Location:
chromosome: 15
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2023_10 current rZooViv1.1 (GCF_963506605.1) 15 NC_083290.1 (9100394..9154228)
100 previous assembly UG_Zviv_1 (GCF_011800845.1) Linkage Group LG15 NC_048619.1 (8983512..9034834)

Chromosome 15 - NC_083290.1Genomic Context describing neighboring genes Neighboring gene MAX network transcriptional repressor Neighboring gene transfer RNA lysine (anticodon UUU) Neighboring gene clustered mitochondria homolog Neighboring gene coiled-coil domain containing 92B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intra-Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of COPI vesicle coat IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
platelet-activating factor acetylhydrolase IB subunit beta

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_963506605.1-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rZooViv1.1

Genomic

  1. NC_083290.1 Reference rZooViv1.1

    Range
    9100394..9154228
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035138966.2 → XP_034994857.1  platelet-activating factor acetylhydrolase IB subunit beta

    Related
    ENSZVIP00000019953.1
    Conserved Domains (3) summary
    smart00667
    Location:7 → 39
    LisH; Lissencephaly type-1-like homology motif
    cd00200
    Location:104 → 408
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:111 → 148
    7WD40; WD40 repeat [structural motif]
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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