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C1GALT1 core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 [ Zootoca vivipara (common lizard) ]

Gene ID: 118092007, updated on 20-Mar-2024

Summary

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Gene symbol
C1GALT1
Gene description
core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1
See related
EnsemblRapid:ENSZVIG00000007127
Gene type
protein coding
RefSeq status
MODEL
Organism
Zootoca vivipara
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Laterata; Lacertibaenia; Lacertidae; Zootoca
Orthologs
human mouse all
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Genomic context

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See C1GALT1 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current rZooViv1.1 (GCF_963506605.1) 12 NC_083287.1 (30492326..30509574, complement)
100 previous assembly UG_Zviv_1 (GCF_011800845.1) Linkage Group LG10 NC_048614.1 (28262078..28275876)

Chromosome 12 - NC_083287.1Genomic Context describing neighboring genes Neighboring gene UBAP1-MVB12-associated (UMA) domain containing 1 Neighboring gene replication protein A3 Neighboring gene meiosis regulator for oocyte development Neighboring gene collagen type XXVIII alpha 1 chain Neighboring gene asparagine synthetase (glutamine-hydrolyzing) Neighboring gene tachykinin precursor 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in O-glycan processing, core 1 IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_963506605.1-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rZooViv1.1

Genomic

  1. NC_083287.1 Reference rZooViv1.1

    Range
    30492326..30509574 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035129685.2 → XP_034985576.1  glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1

    Conserved Domains (1) summary
    cl21608
    Location:166 → 252
    Galactosyl_T; Galactosyltransferase

  2. XM_035129684.2 → XP_034985575.1  glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1

    Related
    ENSZVIP00000009404.1
    Conserved Domains (1) summary
    cl21608
    Location:166 → 252
    Galactosyl_T; Galactosyltransferase
Nucleotide Protein
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