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PLEC plectin [ Zootoca vivipara (common lizard) ]

Gene ID: 118089748, updated on 20-Mar-2024

Summary

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Gene symbol
PLEC
Gene description
plectin
See related
EnsemblRapid:ENSZVIG00000005576
Gene type
protein coding
RefSeq status
MODEL
Organism
Zootoca vivipara
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Laterata; Lacertibaenia; Lacertidae; Zootoca
Orthologs
human mouse all
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Genomic context

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See PLEC in Genome Data Viewer
Location:
chromosome: 8
Exon count:
49
Annotation release Status Assembly Chr Location
RS_2023_10 current rZooViv1.1 (GCF_963506605.1) 8 NC_083283.1 (384315..501004, complement)
100 previous assembly UG_Zviv_1 (GCF_011800845.1) Linkage Group LG8 NC_048612.1 (79397491..79515405)

Chromosome 8 - NC_083283.1Genomic Context describing neighboring genes Neighboring gene microtubule-actin cross-linking factor 1 Neighboring gene microtubule-actin cross-linking factor 1-like Neighboring gene poly(ADP-ribose) polymerase family member 10 Neighboring gene glutamate ionotropic receptor NMDA type subunit associated protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ankyrin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cadherin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables keratin filament binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of muscle IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in hemidesmosome assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intermediate filament bundle assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in wound healing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in focal adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in hemidesmosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in keratin filament IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in perinuclear region of cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
plectin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_963506605.1-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rZooViv1.1

Genomic

  1. NC_083283.1 Reference rZooViv1.1

    Range
    384315..501004 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035124578.2 → XP_034980469.2  plectin isoform X5

  2. XM_035124576.2 → XP_034980467.2  plectin isoform X2

  3. XM_060278200.1 → XP_060134183.1  plectin isoform X23

  4. XM_035124579.2 → XP_034980470.2  plectin isoform X7

  5. XM_035124581.2 → XP_034980472.2  plectin isoform X9

  6. XM_035124591.2 → XP_034980482.2  plectin isoform X17

  7. XM_035124589.2 → XP_034980480.2  plectin isoform X15

  8. XM_035124595.2 → XP_034980486.2  plectin isoform X19

  9. XM_035124596.2 → XP_034980487.2  plectin isoform X20

  10. XM_035124575.2 → XP_034980466.2  plectin isoform X1

  11. XM_060278199.1 → XP_060134182.1  plectin isoform X3

  12. XM_035124590.2 → XP_034980481.2  plectin isoform X16

  13. XM_035124593.2 → XP_034980484.2  plectin isoform X18

  14. XM_035124592.2 → XP_034980483.2  plectin isoform X4

  15. XM_035124594.2 → XP_034980485.2  plectin isoform X6

  16. XM_035124598.2 → XP_034980489.2  plectin isoform X22

  17. XM_035124597.2 → XP_034980488.2  plectin isoform X21

  18. XM_035124588.2 → XP_034980479.2  plectin isoform X14

  19. XM_035124587.2 → XP_034980478.2  plectin isoform X13

  20. XM_035124583.2 → XP_034980474.2  plectin isoform X12

  21. XM_035124582.2 → XP_034980473.2  plectin isoform X11

  22. XM_035124586.2 → XP_034980477.2  plectin isoform X10

  23. XM_035124584.2 → XP_034980475.2  plectin isoform X8

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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