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POMGNT1 protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-) [ Zootoca vivipara (common lizard) ]

Gene ID: 118088665, updated on 20-Mar-2024

Summary

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Gene symbol
POMGNT1
Gene description
protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-)
See related
EnsemblRapid:ENSZVIG00000005760
Gene type
protein coding
RefSeq status
MODEL
Organism
Zootoca vivipara
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Laterata; Lacertibaenia; Lacertidae; Zootoca
Orthologs
human mouse all
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Genomic context

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See POMGNT1 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
23
Annotation release Status Assembly Chr Location
RS_2023_10 current rZooViv1.1 (GCF_963506605.1) 7 NC_083282.1 (43961393..43990514)
100 previous assembly UG_Zviv_1 (GCF_011800845.1) Linkage Group LG7 NC_048611.1 (51463233..51490496, complement)

Chromosome 7 - NC_083282.1Genomic Context describing neighboring genes Neighboring gene RAD54 like Neighboring gene leucine rich adaptor protein 1 Neighboring gene U4 spliceosomal RNA Neighboring gene tetraspanin 1 Neighboring gene phosphoinositide-3-kinase regulatory subunit 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,3-N-acetylglucosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in O-glycan processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_963506605.1-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rZooViv1.1

Genomic

  1. NC_083282.1 Reference rZooViv1.1

    Range
    43961393..43990514
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035122585.2 → XP_034978476.1  protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1 isoform X1

    Related
    ENSZVIP00000007618.1
    Conserved Domains (2) summary
    cd02514
    Location:295 → 622
    GT13_GLCNAC-TI; GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides
    cd13937
    Location:93 → 240
    PANDER_GnT-1_2_like; PANDER-like domain of N-acetylglucosaminyltransferases

  2. XM_035122586.2 → XP_034978477.1  protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1 isoform X1

    Conserved Domains (2) summary
    cd02514
    Location:295 → 622
    GT13_GLCNAC-TI; GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides
    cd13937
    Location:93 → 240
    PANDER_GnT-1_2_like; PANDER-like domain of N-acetylglucosaminyltransferases

  3. XM_060276937.1 → XP_060132920.1  protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1 isoform X2

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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