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POMT1 protein O-mannosyltransferase 1 [ Zootoca vivipara (common lizard) ]

Gene ID: 118083790, updated on 20-Mar-2024

Summary

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Gene symbol
POMT1
Gene description
protein O-mannosyltransferase 1
See related
EnsemblRapid:ENSZVIG00000005904
Gene type
protein coding
RefSeq status
MODEL
Organism
Zootoca vivipara
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Laterata; Lacertibaenia; Lacertidae; Zootoca
Orthologs
human mouse all
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Genomic context

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See POMT1 in Genome Data Viewer
Location:
chromosome: Z
Exon count:
20
Annotation release Status Assembly Chr Location
RS_2023_10 current rZooViv1.1 (GCF_963506605.1) Z NC_083294.1 (12656096..12683693)
100 previous assembly UG_Zviv_1 (GCF_011800845.1) Linkage Group LG4 NC_048608.1 (68045295..68071837, complement)

Chromosome Z - NC_083294.1Genomic Context describing neighboring genes Neighboring gene phospholipid phosphatase 7 (inactive) Neighboring gene proline rich coiled-coil 2B Neighboring gene small nucleolar RNA SNORD62 Neighboring gene uridine-cytidine kinase 1 Neighboring gene Rap guanine nucleotide exchange factor 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables dolichyl-phosphate-mannose-protein mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein O-linked mannosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein O-mannosyl-transferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_963506605.1-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rZooViv1.1

Genomic

  1. NC_083294.1 Reference rZooViv1.1

    Range
    12656096..12683693
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035112624.2 → XP_034968515.1  protein O-mannosyl-transferase 1 isoform X1

    Conserved Domains (1) summary
    COG1928
    Location:30 → 720
    PMT1; Dolichyl-phosphate-mannose--protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones]

  2. XM_035112625.2 → XP_034968516.1  protein O-mannosyl-transferase 1 isoform X1

    Related
    ENSZVIP00000009302.1
    Conserved Domains (1) summary
    COG1928
    Location:30 → 720
    PMT1; Dolichyl-phosphate-mannose--protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones]

  3. XM_035112627.2 → XP_034968518.1  protein O-mannosyl-transferase 1 isoform X2

    Related
    ENSZVIP00000009423.1
    Conserved Domains (1) summary
    COG1928
    Location:5 → 647
    PMT1; Dolichyl-phosphate-mannose--protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones]
Nucleotide Protein
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