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LOC118078746 aspartyl/asparaginyl beta-hydroxylase-like [ Zootoca vivipara (common lizard) ]

Gene ID: 118078746, updated on 30-Nov-2023

Summary

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Gene symbol
LOC118078746
Gene description
aspartyl/asparaginyl beta-hydroxylase-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Zootoca vivipara
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Laterata; Lacertibaenia; Lacertidae; Zootoca
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Genomic context

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See LOC118078746 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current rZooViv1.1 (GCF_963506605.1) 3 NC_083278.1 (113724814..113726465)
100 previous assembly UG_Zviv_1 (GCF_011800845.1) Unplaced Scaffold NW_023293713.1 (1429..1901)

Chromosome 3 - NC_083278.1Genomic Context describing neighboring genes Neighboring gene myelomonocytic growth factor-like Neighboring gene uncharacterized LOC118081822 Neighboring gene uncharacterized LOC132591838 Neighboring gene uncharacterized LOC132591925

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables peptidyl-aspartic acid 3-dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in peptidyl-aspartic acid hydroxylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
aspartyl/asparaginyl beta-hydroxylase-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_963506605.1-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rZooViv1.1

Genomic

  1. NC_083278.1 Reference rZooViv1.1

    Range
    113724814..113726465
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_060273283.1 → XP_060129266.1  aspartyl/asparaginyl beta-hydroxylase-like

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases