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LOC118037582 sulfoquinovosyl transferase SQD2-like [ Populus alba (white poplar) ]

Gene ID: 118037582, updated on 22-Oct-2023

Summary

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Gene symbol
LOC118037582
Gene description
sulfoquinovosyl transferase SQD2-like
Locus tag
D5086_0000235740
Gene type
protein coding
RefSeq status
MODEL
Organism
Populus alba
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Genomic context

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See LOC118037582 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
100 current ASM523922v1 (GCF_005239225.1) Unplaced Scaffold NW_023272218.1 (981567..989024, complement)

NW_023272218.1Genomic Context describing neighboring genes Neighboring gene transcription factor DIVARICATA-like Neighboring gene BAHD acyltransferase DCR-like Neighboring gene josephin-like protein Neighboring gene signal recognition particle 54 kDa protein 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_023272218 Unplaced Scaffold Reference ASM523922v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables UDP-sulfoquinovose:DAG sulfoquinovosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glycolipid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sulfolipid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast envelope IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sulfoquinovosyl transferase SQD2-like
Names
SULFOQUINOVOSYLDIACYLGLYCEROL 2 family protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Populus alba Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM523922v1 Primary Assembly

Genomic

  1. NW_023272218.1 Reference ASM523922v1 Primary Assembly

    Range
    981567..989024 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035043616.1 → XP_034899507.1  sulfoquinovosyl transferase SQD2-like isoform X4

    Conserved Domains (1) summary
    PLN02871
    Location:51 → 398
    PLN02871; UDP-sulfoquinovose:DAG sulfoquinovosyltransferase

  2. XM_035043617.1 → XP_034899508.1  sulfoquinovosyl transferase SQD2-like isoform X5

    Conserved Domains (1) summary
    PLN02871
    Location:51 → 397
    PLN02871; UDP-sulfoquinovose:DAG sulfoquinovosyltransferase

  3. XM_035043613.1 → XP_034899504.1  sulfoquinovosyl transferase SQD2-like isoform X1

    Conserved Domains (1) summary
    PLN02871
    Location:1 → 430
    PLN02871; UDP-sulfoquinovose:DAG sulfoquinovosyltransferase

  4. XM_035043614.1 → XP_034899505.1  sulfoquinovosyl transferase SQD2-like isoform X2

    UniProtKB/TrEMBL
    A0A4U5P425
    Conserved Domains (1) summary
    PLN02871
    Location:1 → 429
    PLN02871; UDP-sulfoquinovose:DAG sulfoquinovosyltransferase

  5. XM_035043615.1 → XP_034899506.1  sulfoquinovosyl transferase SQD2-like isoform X3

    Conserved Domains (1) summary
    PLN02871
    Location:54 → 425
    PLN02871; UDP-sulfoquinovose:DAG sulfoquinovosyltransferase

  6. XM_035043618.1 → XP_034899509.1  sulfoquinovosyl transferase SQD2-like isoform X6

    Conserved Domains (1) summary
    PLN02871
    Location:1 → 375
    PLN02871; UDP-sulfoquinovose:DAG sulfoquinovosyltransferase

  7. XM_035043619.1 → XP_034899510.1  sulfoquinovosyl transferase SQD2-like isoform X7

    Conserved Domains (1) summary
    PLN02871
    Location:1 → 374
    PLN02871; UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Nucleotide Protein
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