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LOC118027633 calcium-dependent protein kinase 34 [ Populus alba (white poplar) ]

Gene ID: 118027633, updated on 18-Sep-2024

Summary

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Gene symbol
LOC118027633
Gene description
calcium-dependent protein kinase 34
Locus tag
D5086_0000169300
Gene type
protein coding
RefSeq status
MODEL
Organism
Populus alba
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Genomic context

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See LOC118027633 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
100 current ASM523922v1 (GCF_005239225.1) Unplaced Scaffold NW_023271847.1 (730219..733650)

NW_023271847.1Genomic Context describing neighboring genes Neighboring gene protein CLT1, chloroplastic Neighboring gene rhodanese-like/PpiC domain-containing protein 12, chloroplastic Neighboring gene flavonoid 3',5'-hydroxylase 2-like Neighboring gene uncharacterized LOC118027619

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_023271847 Unplaced Scaffold Reference ASM523922v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium-dependent protein serine/threonine kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium/calmodulin-dependent protein kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calmodulin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intracellular signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in peptidyl-serine phosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein autophosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calcium-dependent protein kinase 34

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Populus alba Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM523922v1 Primary Assembly

Genomic

  1. NW_023271847.1 Reference ASM523922v1 Primary Assembly

    Range
    730219..733650
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035031030.1 → XP_034886921.1  calcium-dependent protein kinase 34

    UniProtKB/TrEMBL
    A0A4U5PWC6
    Conserved Domains (2) summary
    PTZ00184
    Location:368 → 507
    PTZ00184; calmodulin; Provisional
    cd05117
    Location:70 → 327
    STKc_CAMK; The catalytic domain of CAMK family Serine/Threonine Kinases
Nucleotide Protein
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