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SGCA sarcoglycan alpha [ Mirounga leonina (Southern elephant seal) ]

Gene ID: 118024772, updated on 20-Mar-2024

Summary

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Gene symbol
SGCA
Gene description
sarcoglycan alpha
Locus tag
GH733_014142
See related
EnsemblRapid:ENSMLOG00005024224
Gene type
protein coding
RefSeq status
MODEL
Organism
Mirounga leonina
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Pinnipedia; Phocidae; Mirounga
Orthologs
human mouse all
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Genomic context

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See SGCA in Genome Data Viewer
Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
100 current KU_Mleo_1.0 (GCF_011800145.1) Unplaced Scaffold NW_023270503.1 (22100008..22110265, complement)

NW_023270503.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC118024770 Neighboring gene collagen type I alpha 1 chain Neighboring gene protein phosphatase 1 regulatory subunit 9B Neighboring gene sterile alpha motif domain containing 14

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_023270503 Unplaced Scaffold Reference KU_Mleo_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-sarcoglycan

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mirounga leonina Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference KU_Mleo_1.0 Primary Assembly

Genomic

  1. NW_023270503.1 Reference KU_Mleo_1.0 Primary Assembly

    Range
    22100008..22110265 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035026879.1 → XP_034882770.1  alpha-sarcoglycan

    Conserved Domains (1) summary
    pfam05510
    Location:20 → 346
    Sarcoglycan_2; Sarcoglycan alpha/epsilon

  2. XM_035026878.1 → XP_034882769.1  alpha-sarcoglycan

    Related
    ENSMLOP00005035396.1, ENSMLOT00005039687.1
    Conserved Domains (1) summary
    pfam05510
    Location:20 → 346
    Sarcoglycan_2; Sarcoglycan alpha/epsilon
Nucleotide Protein
Heading Accession and Version

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