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SFTPA1 surfactant protein A1 [ Mirounga leonina (Southern elephant seal) ]

Gene ID: 118020443, updated on 20-Mar-2024

Summary

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Gene symbol
SFTPA1
Gene description
surfactant protein A1
See related
EnsemblRapid:ENSMLOG00005024114
Gene type
protein coding
RefSeq status
MODEL
Organism
Mirounga leonina
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Pinnipedia; Phocidae; Mirounga
Orthologs
human all
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Genomic context

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See SFTPA1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
100 current KU_Mleo_1.0 (GCF_011800145.1) Unplaced Scaffold NW_023270265.1 (7393380..7397363, complement)

NW_023270265.1Genomic Context describing neighboring genes Neighboring gene surfactant protein D Neighboring gene mannose binding lectin 2 Neighboring gene methionine adenosyltransferase 1A Neighboring gene DPY30 domain containing 1 Neighboring gene DPY30 domain containing 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_023270265 Unplaced Scaffold Reference KU_Mleo_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in multivesicular body IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in rough endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pulmonary surfactant-associated protein A1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mirounga leonina Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference KU_Mleo_1.0 Primary Assembly

Genomic

  1. NW_023270265.1 Reference KU_Mleo_1.0 Primary Assembly

    Range
    7393380..7397363 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035020288.1 → XP_034876179.1  pulmonary surfactant-associated protein A1

    Related
    ENSMLOP00005035220.1, ENSMLOT00005039493.1
    Conserved Domains (2) summary
    cd03591
    Location:153 → 265
    CLECT_collectin_like; C-type lectin-like domain (CTLD) of the type found in human collectins including lung surfactant proteins A and D, mannose- or mannan binding lectin (MBL), and CL-L1 (collectin liver 1)
    pfam01391
    Location:45 → 117
    Collagen; Collagen triple helix repeat (20 copies)
Nucleotide Protein
Heading Accession and Version

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