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SDC4 syndecan 4 [ Mirounga leonina (Southern elephant seal) ]

Gene ID: 118011529, updated on 20-Mar-2024

Summary

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Gene symbol
SDC4
Gene description
syndecan 4
Locus tag
GH733_010262
See related
EnsemblRapid:ENSMLOG00005005729
Gene type
protein coding
RefSeq status
MODEL
Organism
Mirounga leonina
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Pinnipedia; Phocidae; Mirounga
Orthologs
human mouse all
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Genomic context

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See SDC4 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
100 current KU_Mleo_1.0 (GCF_011800145.1) Unplaced Scaffold NW_023270374.1 (35352375..35370203, complement)

NW_023270374.1Genomic Context describing neighboring genes Neighboring gene antileukoproteinase-like Neighboring gene matrilin 4 Neighboring gene recombination signal binding protein for immunoglobulin kappa J region like Neighboring gene SYS1 golgi trafficking protein Neighboring gene TP53 target 5 Neighboring gene dysbindin domain containing 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_023270374 Unplaced Scaffold Reference KU_Mleo_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell surface IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
syndecan-4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mirounga leonina Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference KU_Mleo_1.0 Primary Assembly

Genomic

  1. NW_023270374.1 Reference KU_Mleo_1.0 Primary Assembly

    Range
    35352375..35370203 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035006401.1 → XP_034862292.1  syndecan-4 isoform X1

    Related
    ENSMLOP00005007979.1, ENSMLOT00005009108.1
    Conserved Domains (1) summary
    pfam01034
    Location:141 → 198
    Syndecan; Syndecan domain

  2. XM_035006403.1 → XP_034862294.1  syndecan-4 isoform X2

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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