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JAG1 jagged canonical Notch ligand 1 [ Mirounga leonina (Southern elephant seal) ]

Gene ID: 118011235, updated on 20-Mar-2024

Summary

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Gene symbol
JAG1
Gene description
jagged canonical Notch ligand 1
Locus tag
GH733_010000
See related
EnsemblRapid:ENSMLOG00005019789
Gene type
protein coding
RefSeq status
MODEL
Organism
Mirounga leonina
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Pinnipedia; Phocidae; Mirounga
Orthologs
human mouse all
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Genomic context

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See JAG1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
26
Annotation release Status Assembly Chr Location
100 current KU_Mleo_1.0 (GCF_011800145.1) Unplaced Scaffold NW_023270374.1 (14576826..14612493)

NW_023270374.1Genomic Context describing neighboring genes Neighboring gene U4 spliceosomal RNA Neighboring gene U4 spliceosomal RNA Neighboring gene SLX4 interacting protein Neighboring gene MKKS centrosomal shuttling protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_023270374 Unplaced Scaffold Reference KU_Mleo_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables Notch binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in Notch signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell communication IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in multicellular organism development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein jagged-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mirounga leonina Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference KU_Mleo_1.0 Primary Assembly

Genomic

  1. NW_023270374.1 Reference KU_Mleo_1.0 Primary Assembly

    Range
    14576826..14612493
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035005834.1 → XP_034861725.1  protein jagged-1

    Related
    ENSMLOP00005028729.1, ENSMLOT00005032310.1
    Conserved Domains (5) summary
    smart00215
    Location:863 → 930
    VWC_out; von Willebrand factor (vWF) type C domain
    cd00054
    Location:629 → 665
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    pfam00008
    Location:748 → 777
    EGF; EGF-like domain
    pfam01414
    Location:167 → 229
    DSL; Delta serrate ligand
    pfam07657
    Location:32 → 107
    MNNL; N-terminus of Notch ligand
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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