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CAPN3 calpain 3 [ Mirounga leonina (Southern elephant seal) ]

Gene ID: 118003460, updated on 20-Mar-2024

Summary

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Gene symbol
CAPN3
Gene description
calpain 3
Locus tag
GH733_004260
See related
EnsemblRapid:ENSMLOG00005005886
Gene type
protein coding
RefSeq status
MODEL
Organism
Mirounga leonina
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Pinnipedia; Phocidae; Mirounga
Orthologs
human mouse all
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Genomic context

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See CAPN3 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
24
Annotation release Status Assembly Chr Location
100 current KU_Mleo_1.0 (GCF_011800145.1) Unplaced Scaffold NW_023270839.1 (19260702..19309865)

NW_023270839.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 87A Neighboring gene U6 spliceosomal RNA Neighboring gene glucosidase alpha, neutral C Neighboring gene uncharacterized LOC118003462 Neighboring gene zinc finger protein 106 Neighboring gene heterogeneous nuclear ribonucleoprotein A1-like Neighboring gene synaptosome associated protein 23

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_023270839 Unplaced Scaffold Reference KU_Mleo_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium-dependent cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of apoptotic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calpain-3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mirounga leonina Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference KU_Mleo_1.0 Primary Assembly

Genomic

  1. NW_023270839.1 Reference KU_Mleo_1.0 Primary Assembly

    Range
    19260702..19309865
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034994541.1 → XP_034850432.1  calpain-3

    Related
    ENSMLOP00005010822.1, ENSMLOT00005012237.1
    Conserved Domains (4) summary
    cd16190
    Location:653 → 821
    EFh_PEF_CAPN3; Calcium-activated neutral
    pfam00648
    Location:77 → 415
    Peptidase_C2; Calpain family cysteine protease
    pfam01067
    Location:436 → 574
    Calpain_III; Calpain large subunit, domain III
    pfam16648
    Location:583 → 653
    Calpain_u2; Unstructured region on Calpain-3
Nucleotide Protein
Heading Accession and Version

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