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LOC117971672 secreted frizzled-related protein 1-like [ Acipenser ruthenus (sterlet) ]

Gene ID: 117971672, updated on 26-Oct-2023

Summary

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Gene symbol
LOC117971672
Gene description
secreted frizzled-related protein 1-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Acipenser ruthenus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Chondrostei; Acipenseriformes; Acipenseridae; Acipenser
Also known as
sfrp1a
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Genomic context

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See LOC117971672 in Genome Data Viewer
Location:
chromosome: 46
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_08 current fAciRut3.2 maternal haplotype (GCF_902713425.1) 46 NC_081234.1 (7994165..8035778)
101 previous assembly ASM1064508v1 (GCF_010645085.1) Unplaced Scaffold NW_023263707.1 (1953630..1987610)

Chromosome 46 - NC_081234.1Genomic Context describing neighboring genes Neighboring gene lysyl oxidase homolog 2B-like Neighboring gene R3H and coiled-coil domain-containing protein 1 Neighboring gene golgin subfamily A member 7 Neighboring gene zinc finger matrin-type protein 4 Neighboring gene transcriptional and immune response regulator-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables Wnt-protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in canonical Wnt signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of canonical Wnt signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in non-canonical Wnt signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
secreted frizzled-related protein 1-like
Names
secreted frizzled-related protein 1
secreted frizzled-related protein 1a

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_902713425.1-RS_2023_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fAciRut3.2 maternal haplotype Primary Assembly

Genomic

  1. NC_081234.1 Reference fAciRut3.2 maternal haplotype Primary Assembly

    Range
    7994165..8035778
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_059013637.1 → XP_058869620.1  secreted frizzled-related protein 1-like

Nucleotide Protein
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