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sgcd sarcoglycan, delta (dystrophin-associated glycoprotein) [ Etheostoma cragini (Arkansas darter) ]

Gene ID: 117955336, updated on 19-Mar-2024

Summary

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Gene symbol
sgcd
Gene description
sarcoglycan, delta (dystrophin-associated glycoprotein)
Gene type
protein coding
RefSeq status
MODEL
Organism
Etheostoma cragini
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Percoidei; Percidae; Etheostomatinae; Etheostoma
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 13
Exon count:
11
Annotation release Status Assembly Chr Location
100 current CSU_Ecrag_1.0 (GCF_013103735.1) 13 NC_048419.1 (24677336..24934036)

Chromosome 13 - NC_048419.1Genomic Context describing neighboring genes Neighboring gene aromatic-L-amino-acid decarboxylase-like Neighboring gene mitochondrial ribosomal protein L22 Neighboring gene uncharacterized LOC117955350 Neighboring gene rho GTPase-activating protein 7 Neighboring gene arginyl-tRNA synthetase 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_048419.1 Chromosome 13 Reference CSU_Ecrag_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cardiac muscle tissue development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
delta-sarcoglycan

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Etheostoma cragini Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CSU_Ecrag_1.0

Genomic

  1. NC_048419.1 Reference CSU_Ecrag_1.0

    Range
    24677336..24934036
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034889770.1 → XP_034745661.1  delta-sarcoglycan isoform X2

    Conserved Domains (1) summary
    pfam04790
    Location:22 → 279
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  2. XM_034889767.1 → XP_034745658.1  delta-sarcoglycan isoform X2

    Conserved Domains (1) summary
    pfam04790
    Location:22 → 279
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  3. XM_034889768.1 → XP_034745659.1  delta-sarcoglycan isoform X2

    Conserved Domains (1) summary
    pfam04790
    Location:22 → 279
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  4. XM_034889766.1 → XP_034745657.1  delta-sarcoglycan isoform X1

    Conserved Domains (1) summary
    pfam04790
    Location:23 → 280
    Sarcoglycan_1; Sarcoglycan complex subunit protein
Nucleotide Protein
Heading Accession and Version

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