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kirrel1b kirre like nephrin family adhesion molecule 1b [ Etheostoma cragini (Arkansas darter) ]

Gene ID: 117953616, updated on 19-Mar-2024

Summary

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Gene symbol
kirrel1b
Gene description
kirre like nephrin family adhesion molecule 1b
Gene type
protein coding
RefSeq status
MODEL
Organism
Etheostoma cragini
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Percoidei; Percidae; Etheostomatinae; Etheostoma
Orthologs
zebrafish all
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Genomic context

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See kirrel1b in Genome Data Viewer
Location:
chromosome: 12
Exon count:
15
Annotation release Status Assembly Chr Location
100 current CSU_Ecrag_1.0 (GCF_013103735.1) 12 NC_048418.1 (20134240..20221461)

Chromosome 12 - NC_048418.1Genomic Context describing neighboring genes Neighboring gene transfer RNA arginine (anticodon UCU) Neighboring gene cell adhesion molecule 3 Neighboring gene uncharacterized LOC117953695 Neighboring gene uncharacterized LOC117953691 Neighboring gene ATP-sensitive inward rectifier potassium channel 10-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_048418.1 Chromosome 12 Reference CSU_Ecrag_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell adhesion molecule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell-cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
kin of IRRE-like protein 1b

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Etheostoma cragini Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CSU_Ecrag_1.0

Genomic

  1. NC_048418.1 Reference CSU_Ecrag_1.0

    Range
    20134240..20221461
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034886798.1 → XP_034742689.1  kin of IRRE-like protein 1b isoform X1

    Conserved Domains (3) summary
    pfam13927
    Location:306 → 371
    Ig_3; Immunoglobulin domain
    cd00096
    Location:390 → 394
    Ig; Ig strand A [structural motif]
    cl11960
    Location:389 → 492
    Ig; Immunoglobulin domain

  2. XM_034886799.1 → XP_034742690.1  kin of IRRE-like protein 1b isoform X2

    Conserved Domains (3) summary
    pfam13927
    Location:306 → 371
    Ig_3; Immunoglobulin domain
    cd00096
    Location:390 → 394
    Ig; Ig strand A [structural motif]
    cl11960
    Location:389 → 492
    Ig; Immunoglobulin domain
Nucleotide Protein
Heading Accession and Version

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