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LOC117950806 torsin-1A-interacting protein 2-like [ Etheostoma cragini (Arkansas darter) ]

Gene ID: 117950806, updated on 22-Oct-2023

Summary

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Gene symbol
LOC117950806
Gene description
torsin-1A-interacting protein 2-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Etheostoma cragini
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Percoidei; Percidae; Etheostomatinae; Etheostoma
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Genomic context

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See LOC117950806 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
8
Annotation release Status Assembly Chr Location
100 current CSU_Ecrag_1.0 (GCF_013103735.1) 9 NC_048415.1 (16831162..16835701)

Chromosome 9 - NC_048415.1Genomic Context describing neighboring genes Neighboring gene torsin-1A-interacting protein 2-like Neighboring gene uncharacterized LOC117950808 Neighboring gene uncharacterized LOC117950822 Neighboring gene uncharacterized LOC117951075

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_048415.1 Chromosome 9 Reference CSU_Ecrag_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATPase activator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in membrane organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
torsin-1A-interacting protein 2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Etheostoma cragini Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CSU_Ecrag_1.0

Genomic

  1. NC_048415.1 Reference CSU_Ecrag_1.0

    Range
    16831162..16835701
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034882147.1 → XP_034738038.1  torsin-1A-interacting protein 2-like isoform X2

    Conserved Domains (2) summary
    pfam09507
    Location:16 → 118
    CDC27; DNA polymerase subunit Cdc27
    pfam05609
    Location:273 → 521
    LAP1C; Lamina-associated polypeptide 1C (LAP1C)

  2. XM_034882149.1 → XP_034738040.1  torsin-1A-interacting protein 2-like isoform X4

    Conserved Domains (1) summary
    pfam05609
    Location:232 → 480
    LAP1C; Lamina-associated polypeptide 1C (LAP1C)

  3. XM_034882146.1 → XP_034738037.1  torsin-1A-interacting protein 2-like isoform X1

    Conserved Domains (2) summary
    pfam09507
    Location:16 → 121
    CDC27; DNA polymerase subunit Cdc27
    pfam05609
    Location:276 → 524
    LAP1C; Lamina-associated polypeptide 1C (LAP1C)

  4. XM_034882148.1 → XP_034738039.1  torsin-1A-interacting protein 2-like isoform X3

    Conserved Domains (2) summary
    pfam09507
    Location:13 → 116
    CDC27; DNA polymerase subunit Cdc27
    pfam05609
    Location:271 → 519
    LAP1C; Lamina-associated polypeptide 1C (LAP1C)
Nucleotide Protein
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