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galnt6 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 6 (GalNAc-T6) [ Etheostoma cragini (Arkansas darter) ]

Gene ID: 117947765, updated on 19-Mar-2024

Summary

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Gene symbol
galnt6
Gene description
UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 6 (GalNAc-T6)
Gene type
protein coding
RefSeq status
MODEL
Organism
Etheostoma cragini
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Percoidei; Percidae; Etheostomatinae; Etheostoma
Orthologs
zebrafish all
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Genomic context

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See galnt6 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
11
Annotation release Status Assembly Chr Location
100 current CSU_Ecrag_1.0 (GCF_013103735.1) 7 NC_048413.1 (15464968..15473382, complement)

Chromosome 7 - NC_048413.1Genomic Context describing neighboring genes Neighboring gene ceramide kinase family protein Neighboring gene glucose-6-phosphate 1-dehydrogenase-like Neighboring gene adenylate cyclase 6b Neighboring gene calcium channel, voltage-dependent, beta 3b

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_048413.1 Chromosome 7 Reference CSU_Ecrag_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polypeptide N-acetylgalactosaminyltransferase 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Etheostoma cragini Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CSU_Ecrag_1.0

Genomic

  1. NC_048413.1 Reference CSU_Ecrag_1.0

    Range
    15464968..15473382 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034877015.1 → XP_034732906.1  polypeptide N-acetylgalactosaminyltransferase 6

    Conserved Domains (2) summary
    cd02510
    Location:178 → 483
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:496 → 619
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain

  2. XM_034877016.1 → XP_034732907.1  polypeptide N-acetylgalactosaminyltransferase 6

    Conserved Domains (2) summary
    cd02510
    Location:178 → 483
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:496 → 619
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain

  3. XM_034877017.1 → XP_034732908.1  polypeptide N-acetylgalactosaminyltransferase 6

    Conserved Domains (2) summary
    cd02510
    Location:178 → 483
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:496 → 619
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
Nucleotide Protein
Heading Accession and Version

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