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lamb2l laminin, beta 2-like [ Etheostoma cragini (Arkansas darter) ]

Gene ID: 117947092, updated on 19-Mar-2024

Summary

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Gene symbol
lamb2l
Gene description
laminin, beta 2-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Etheostoma cragini
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Percoidei; Percidae; Etheostomatinae; Etheostoma
Orthologs
zebrafish all
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Genomic context

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See lamb2l in Genome Data Viewer
Location:
chromosome: 7
Exon count:
38
Annotation release Status Assembly Chr Location
100 current CSU_Ecrag_1.0 (GCF_013103735.1) 7 NC_048413.1 (24933650..24985372, complement)

Chromosome 7 - NC_048413.1Genomic Context describing neighboring genes Neighboring gene ubiquitin specific peptidase 19 Neighboring gene laminin, beta 2 (laminin S) Neighboring gene phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit Neighboring gene olfactory receptor 14A16

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_048413.1 Chromosome 7 Reference CSU_Ecrag_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables extracellular matrix structural constituent IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in basement membrane assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in substrate adhesion-dependent cell spreading IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of laminin complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
laminin subunit beta-2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Etheostoma cragini Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CSU_Ecrag_1.0

Genomic

  1. NC_048413.1 Reference CSU_Ecrag_1.0

    Range
    24933650..24985372 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034875683.1 → XP_034731574.1  laminin subunit beta-2 isoform X1

    Conserved Domains (6) summary
    smart00180
    Location:931 → 976
    EGF_Lam; Laminin-type epidermal growth factor-like domai
    cd00055
    Location:567 → 618
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    TIGR04523
    Location:1613 → 1949
    Mplasa_alph_rch; helix-rich Mycoplasma protein
    pfam00053
    Location:979 → 1027
    Laminin_EGF; Laminin EGF domain
    pfam00055
    Location:146 → 379
    Laminin_N; Laminin N-terminal (Domain VI)
    cd22295
    Location:1883 → 1952
    cc_LAMB_C; C-terminal coiled-coil domain found in the laminin subunit beta (LAMB) family

  2. XM_034875685.1 → XP_034731576.1  laminin subunit beta-2 isoform X3

    Conserved Domains (6) summary
    smart00180
    Location:828 → 873
    EGF_Lam; Laminin-type epidermal growth factor-like domai
    cd00055
    Location:464 → 515
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    TIGR04523
    Location:1510 → 1846
    Mplasa_alph_rch; helix-rich Mycoplasma protein
    pfam00053
    Location:876 → 924
    Laminin_EGF; Laminin EGF domain
    pfam00055
    Location:43 → 276
    Laminin_N; Laminin N-terminal (Domain VI)
    cd22295
    Location:1780 → 1849
    cc_LAMB_C; C-terminal coiled-coil domain found in the laminin subunit beta (LAMB) family

  3. XM_034875684.1 → XP_034731575.1  laminin subunit beta-2 isoform X2

    Conserved Domains (6) summary
    smart00180
    Location:836 → 881
    EGF_Lam; Laminin-type epidermal growth factor-like domai
    cd00055
    Location:472 → 523
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    TIGR04523
    Location:1518 → 1854
    Mplasa_alph_rch; helix-rich Mycoplasma protein
    pfam00053
    Location:884 → 932
    Laminin_EGF; Laminin EGF domain
    pfam00055
    Location:51 → 284
    Laminin_N; Laminin N-terminal (Domain VI)
    cd22295
    Location:1788 → 1857
    cc_LAMB_C; C-terminal coiled-coil domain found in the laminin subunit beta (LAMB) family

  4. XM_034875686.1 → XP_034731577.1  laminin subunit beta-2 isoform X3

    Conserved Domains (6) summary
    smart00180
    Location:828 → 873
    EGF_Lam; Laminin-type epidermal growth factor-like domai
    cd00055
    Location:464 → 515
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    TIGR04523
    Location:1510 → 1846
    Mplasa_alph_rch; helix-rich Mycoplasma protein
    pfam00053
    Location:876 → 924
    Laminin_EGF; Laminin EGF domain
    pfam00055
    Location:43 → 276
    Laminin_N; Laminin N-terminal (Domain VI)
    cd22295
    Location:1780 → 1849
    cc_LAMB_C; C-terminal coiled-coil domain found in the laminin subunit beta (LAMB) family
Nucleotide Protein
Heading Accession and Version

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