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zbtb44 zinc finger and BTB domain containing 44 [ Etheostoma cragini (Arkansas darter) ]

Gene ID: 117941881, updated on 19-Mar-2024

Summary

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Gene symbol
zbtb44
Gene description
zinc finger and BTB domain containing 44
Gene type
protein coding
RefSeq status
MODEL
Organism
Etheostoma cragini
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Percoidei; Percidae; Etheostomatinae; Etheostoma
Orthologs
human zebrafish all
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Genomic context

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See zbtb44 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
6
Annotation release Status Assembly Chr Location
100 current CSU_Ecrag_1.0 (GCF_013103735.1) 3 NC_048409.1 (25182810..25193889, complement)

Chromosome 3 - NC_048409.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC117940790 Neighboring gene POU domain class 2-associating factor 1 Neighboring gene uncharacterized protein C11orf53 homolog Neighboring gene uncharacterized LOC117940854 Neighboring gene colorectal cancer associated 2 Neighboring gene A disintegrin and metalloproteinase with thrombospondin motifs 8-like Neighboring gene A disintegrin and metalloproteinase with thrombospondin motifs 15-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_048409.1 Chromosome 3 Reference CSU_Ecrag_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of gene expression IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger and BTB domain-containing protein 44

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Etheostoma cragini Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CSU_Ecrag_1.0

Genomic

  1. NC_048409.1 Reference CSU_Ecrag_1.0

    Range
    25182810..25193889 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034867081.1 → XP_034722972.1  zinc finger and BTB domain-containing protein 44 isoform X6

    Conserved Domains (4) summary
    COG5048
    Location:40 → 104
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:56 → 76
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00020
    Location:144 → 166
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:68 → 93
    zf-H2C2_2; Zinc-finger double domain

  2. XM_034867080.1 → XP_034722971.1  zinc finger and BTB domain-containing protein 44 isoform X5

    Conserved Domains (4) summary
    COG5048
    Location:50 → 114
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:66 → 86
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00020
    Location:154 → 176
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:78 → 103
    zf-H2C2_2; Zinc-finger double domain

  3. XM_034867076.1 → XP_034722967.1  zinc finger and BTB domain-containing protein 44 isoform X2

    Conserved Domains (6) summary
    COG5048
    Location:397 → 461
    COG5048; FOG: Zn-finger [General function prediction only]
    COG5189
    Location:311 → 461
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:413 → 433
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00020
    Location:501 → 523
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd18228
    Location:12 → 130
    BTB_POZ_ZBTB44; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 44 (ZBTB44)
    pfam13465
    Location:425 → 450
    zf-H2C2_2; Zinc-finger double domain

  4. XM_034867075.1 → XP_034722966.1  zinc finger and BTB domain-containing protein 44 isoform X1

    Conserved Domains (6) summary
    COG5048
    Location:407 → 471
    COG5048; FOG: Zn-finger [General function prediction only]
    COG5189
    Location:311 → 471
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:423 → 443
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00020
    Location:511 → 533
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd18228
    Location:12 → 130
    BTB_POZ_ZBTB44; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 44 (ZBTB44)
    pfam13465
    Location:435 → 460
    zf-H2C2_2; Zinc-finger double domain

  5. XM_034867077.1 → XP_034722968.1  zinc finger and BTB domain-containing protein 44 isoform X3

    Conserved Domains (5) summary
    COG5048
    Location:407 → 471
    COG5048; FOG: Zn-finger [General function prediction only]
    COG5189
    Location:311 → 471
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:423 → 443
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd18228
    Location:12 → 130
    BTB_POZ_ZBTB44; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 44 (ZBTB44)
    pfam13465
    Location:435 → 460
    zf-H2C2_2; Zinc-finger double domain

  6. XM_034867078.1 → XP_034722969.1  zinc finger and BTB domain-containing protein 44 isoform X4

    Conserved Domains (5) summary
    COG5048
    Location:397 → 461
    COG5048; FOG: Zn-finger [General function prediction only]
    COG5189
    Location:311 → 461
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:413 → 433
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd18228
    Location:12 → 130
    BTB_POZ_ZBTB44; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 44 (ZBTB44)
    pfam13465
    Location:425 → 450
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein
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