U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

nrp1a neuropilin 1a [ Etheostoma cragini (Arkansas darter) ]

Gene ID: 117937782, updated on 19-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
nrp1a
Gene description
neuropilin 1a
Gene type
protein coding
RefSeq status
MODEL
Organism
Etheostoma cragini
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Percoidei; Percidae; Etheostomatinae; Etheostoma
Orthologs
human zebrafish all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See nrp1a in Genome Data Viewer
Location:
chromosome: 22
Exon count:
18
Annotation release Status Assembly Chr Location
100 current CSU_Ecrag_1.0 (GCF_013103735.1) 22 NC_048428.1 (3189745..3251012)

Chromosome 22 - NC_048428.1Genomic Context describing neighboring genes Neighboring gene partitioning defective 3 homolog Neighboring gene uncharacterized LOC117937673 Neighboring gene uncharacterized LOC117938054 Neighboring gene ras-related protein Rab-18 Neighboring gene integrin, beta 1a

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_048428.1 Chromosome 22 Reference CSU_Ecrag_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables semaphorin receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables vascular endothelial growth factor receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in angiogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vascular endothelial growth factor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
neuropilin-1a

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Etheostoma cragini Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CSU_Ecrag_1.0

Genomic

  1. NC_048428.1 Reference CSU_Ecrag_1.0

    Range
    3189745..3251012
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034861990.1 → XP_034717881.1  neuropilin-1a isoform X1

    Conserved Domains (5) summary
    cd00041
    Location:145 → 262
    CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
    cd00057
    Location:276 → 421
    FA58C; Coagulation factor 5/8 C-terminal domain, discoidin domain; Cell surface-attached carbohydrate-binding domain, present in eukaryotes and assumed to have horizontally transferred to eubacterial genomes.
    pfam00431
    Location:25 → 136
    CUB; CUB domain
    pfam00629
    Location:645 → 810
    MAM; MAM domain, meprin/A5/mu
    pfam11980
    Location:846 → 924
    DUF3481; C-terminal domain of neuropilin glycoprotein

  2. XM_034861991.1 → XP_034717882.1  neuropilin-1a isoform X2

    Conserved Domains (5) summary
    cd00041
    Location:145 → 262
    CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
    cd00057
    Location:276 → 421
    FA58C; Coagulation factor 5/8 C-terminal domain, discoidin domain; Cell surface-attached carbohydrate-binding domain, present in eukaryotes and assumed to have horizontally transferred to eubacterial genomes.
    pfam00431
    Location:25 → 136
    CUB; CUB domain
    pfam00629
    Location:638 → 803
    MAM; MAM domain, meprin/A5/mu
    pfam11980
    Location:839 → 917
    DUF3481; C-terminal domain of neuropilin glycoprotein
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases