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sgca sarcoglycan, alpha [ Etheostoma cragini (Arkansas darter) ]

Gene ID: 117937366, updated on 19-Mar-2024

Summary

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Gene symbol
sgca
Gene description
sarcoglycan, alpha
Gene type
protein coding
RefSeq status
MODEL
Organism
Etheostoma cragini
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Percoidei; Percidae; Etheostomatinae; Etheostoma
Orthologs
zebrafish all
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Genomic context

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See sgca in Genome Data Viewer
Location:
chromosome: 21
Exon count:
11
Annotation release Status Assembly Chr Location
100 current CSU_Ecrag_1.0 (GCF_013103735.1) 21 NC_048427.1 (3809721..3815864, complement)

Chromosome 21 - NC_048427.1Genomic Context describing neighboring genes Neighboring gene inactive all-trans-retinol 13,14-reductase Neighboring gene uncharacterized LOC117937074 Neighboring gene collagen, type I, alpha 1b Neighboring gene neurabin-2-like Neighboring gene histone-lysine N-methyltransferase PRDM9-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_048427.1 Chromosome 21 Reference CSU_Ecrag_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-sarcoglycan

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Etheostoma cragini Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CSU_Ecrag_1.0

Genomic

  1. NC_048427.1 Reference CSU_Ecrag_1.0

    Range
    3809721..3815864 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034861275.1 → XP_034717166.1  alpha-sarcoglycan

    Conserved Domains (1) summary
    pfam05510
    Location:25 → 349
    Sarcoglycan_2; Sarcoglycan alpha/epsilon
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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