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LOC117917686 F-box protein GID2-like [ Vitis riparia (riverbank grape) ]

Gene ID: 117917686, updated on 22-Oct-2023

Summary

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Gene symbol
LOC117917686
Gene description
F-box protein GID2-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Vitis riparia
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
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Genomic context

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See LOC117917686 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
1
Annotation release Status Assembly Chr Location
100 current EGFV_Vit.rip_1.0 (GCF_004353265.1) 7 NC_048437.1 (4700952..4701816, complement)

Chromosome 7 - NC_048437.1Genomic Context describing neighboring genes Neighboring gene protein MRG1 Neighboring gene PAMP-induced secreted peptide 2 Neighboring gene probable receptor-like protein kinase At5g24010 Neighboring gene probable receptor-like protein kinase At2g23200

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_048437.1 Chromosome 7 Reference EGFV_Vit.rip_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of gibberellic acid mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of SCF ubiquitin ligase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
F-box protein GID2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Vitis riparia Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EGFV_Vit.rip_1.0 Primary Assembly

Genomic

  1. NC_048437.1 Reference EGFV_Vit.rip_1.0 Primary Assembly

    Range
    4700952..4701816 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034834043.1 → XP_034689934.1  F-box protein GID2-like

    Conserved Domains (1) summary
    pfam12937
    Location:38 → 82
    F-box-like
Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases