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LOC117906483 arabinosyltransferase RRA3-like [ Vitis riparia (riverbank grape) ]

Gene ID: 117906483, updated on 22-Oct-2023

Summary

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Gene symbol
LOC117906483
Gene description
arabinosyltransferase RRA3-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Vitis riparia
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
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Genomic context

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See LOC117906483 in Genome Data Viewer
Location:
chromosome: 18
Exon count:
2
Annotation release Status Assembly Chr Location
100 current EGFV_Vit.rip_1.0 (GCF_004353265.1) 18 NC_048448.1 (10548002..10550488, complement)

Chromosome 18 - NC_048448.1Genomic Context describing neighboring genes Neighboring gene J domain-containing protein required for chloroplast accumulation response 1 Neighboring gene G-box-binding factor 1-like Neighboring gene uncharacterized LOC117905396 Neighboring gene uncharacterized LOC117907869

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_048448.1 Chromosome 18 Reference EGFV_Vit.rip_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in root hair cell development IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
arabinosyltransferase RRA3-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Vitis riparia Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EGFV_Vit.rip_1.0 Primary Assembly

Genomic

  1. NC_048448.1 Reference EGFV_Vit.rip_1.0 Primary Assembly

    Range
    10548002..10550488 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034819503.1 → XP_034675394.1  arabinosyltransferase RRA3-like

    Conserved Domains (1) summary
    pfam03407
    Location:188 → 411
    Nucleotid_trans; Nucleotide-diphospho-sugar transferase
Nucleotide Protein
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