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LOC117906406 probable cellulose synthase A catalytic subunit 5 [UDP-forming] [ Vitis riparia (riverbank grape) ]

Gene ID: 117906406, updated on 22-Oct-2023

Summary

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Gene symbol
LOC117906406
Gene description
probable cellulose synthase A catalytic subunit 5 [UDP-forming]
Gene type
protein coding
RefSeq status
MODEL
Organism
Vitis riparia
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
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Genomic context

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See LOC117906406 in Genome Data Viewer
Location:
chromosome: 18
Exon count:
14
Annotation release Status Assembly Chr Location
100 current EGFV_Vit.rip_1.0 (GCF_004353265.1) 18 NC_048448.1 (177367..183345, complement)

Chromosome 18 - NC_048448.1Genomic Context describing neighboring genes Neighboring gene UDP-rhamnose/UDP-galactose transporter 1-like Neighboring gene myosin heavy chain, fast skeletal muscle Neighboring gene uncharacterized protein At1g76660 Neighboring gene stromal processing peptidase, chloroplastic

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_048448.1 Chromosome 18 Reference EGFV_Vit.rip_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cellulose synthase (UDP-forming) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellulose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plant-type primary cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in trans-Golgi network IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable cellulose synthase A catalytic subunit 5 [UDP-forming]

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Vitis riparia Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EGFV_Vit.rip_1.0 Primary Assembly

Genomic

  1. NC_048448.1 Reference EGFV_Vit.rip_1.0 Primary Assembly

    Range
    177367..183345 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034819414.1 → XP_034675305.1  probable cellulose synthase A catalytic subunit 5 [UDP-forming]

    Conserved Domains (1) summary
    PLN02436
    Location:1 → 1091
    PLN02436; cellulose synthase A
Nucleotide Protein
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