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LOC117904792 rhamnogalacturonan I rhamnosyltransferase 1-like [ Vitis riparia (riverbank grape) ]

Gene ID: 117904792, updated on 22-Oct-2023

Summary

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Gene symbol
LOC117904792
Gene description
rhamnogalacturonan I rhamnosyltransferase 1-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Vitis riparia
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
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Genomic context

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See LOC117904792 in Genome Data Viewer
Location:
chromosome: 17
Exon count:
8
Annotation release Status Assembly Chr Location
100 current EGFV_Vit.rip_1.0 (GCF_004353265.1) 17 NC_048447.1 (14744893..14749436)

Chromosome 17 - NC_048447.1Genomic Context describing neighboring genes Neighboring gene DNA polymerase epsilon subunit B Neighboring gene uncharacterized LOC117905242 Neighboring gene transcription factor BIM2 Neighboring gene phosphatidylinositol 4-kinase gamma 7-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_048447.1 Chromosome 17 Reference EGFV_Vit.rip_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
rhamnogalacturonan I rhamnosyltransferase 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Vitis riparia Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EGFV_Vit.rip_1.0 Primary Assembly

Genomic

  1. NC_048447.1 Reference EGFV_Vit.rip_1.0 Primary Assembly

    Range
    14744893..14749436
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034817554.1 → XP_034673445.1  rhamnogalacturonan I rhamnosyltransferase 1-like

    Conserved Domains (1) summary
    cd11299
    Location:114 → 439
    O-FucT_plant; GDP-fucose protein O-fucosyltransferase, plant specific subfamily
Nucleotide Protein
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