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LOC117903993 probable beta-1,4-xylosyltransferase IRX10L [ Vitis riparia (riverbank grape) ]

Gene ID: 117903993, updated on 22-Oct-2023

Summary

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Gene symbol
LOC117903993
Gene description
probable beta-1,4-xylosyltransferase IRX10L
Gene type
protein coding
RefSeq status
MODEL
Organism
Vitis riparia
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
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Genomic context

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See LOC117903993 in Genome Data Viewer
Location:
chromosome: 17
Exon count:
4
Annotation release Status Assembly Chr Location
100 current EGFV_Vit.rip_1.0 (GCF_004353265.1) 17 NC_048447.1 (20726939..20731497)

Chromosome 17 - NC_048447.1Genomic Context describing neighboring genes Neighboring gene pre-rRNA-processing protein ESF2 Neighboring gene phosphatidylinositol transfer protein 3-like Neighboring gene uncharacterized LOC117903995 Neighboring gene chromophore lyase CRL, chloroplastic

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_048447.1 Chromosome 17 Reference EGFV_Vit.rip_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 1,4-beta-D-xylan synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables glucuronoxylan glucuronosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glucuronoxylan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plant-type secondary cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable beta-1,4-xylosyltransferase IRX10L

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Vitis riparia Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EGFV_Vit.rip_1.0 Primary Assembly

Genomic

  1. NC_048447.1 Reference EGFV_Vit.rip_1.0 Primary Assembly

    Range
    20726939..20731497
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034816524.1 → XP_034672415.1  probable beta-1,4-xylosyltransferase IRX10L isoform X1

    Conserved Domains (1) summary
    pfam03016
    Location:49 → 344
    Exostosin; Exostosin family

  2. XM_034816525.1 → XP_034672416.1  probable beta-1,4-xylosyltransferase IRX10L isoform X2

    Conserved Domains (1) summary
    pfam03016
    Location:1 → 269
    Exostosin; Exostosin family
Nucleotide Protein
Heading Accession and Version

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