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ST3GAL6 ST3 beta-galactoside alpha-2,3-sialyltransferase 6 [ Trachemys scripta elegans ]

Gene ID: 117887334, updated on 19-Mar-2024

Summary

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Gene symbol
ST3GAL6
Gene description
ST3 beta-galactoside alpha-2,3-sialyltransferase 6
Gene type
protein coding
RefSeq status
MODEL
Organism
Trachemys scripta elegans (sub-species: elegans)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Testudinoidea; Emydidae; Trachemys
Orthologs
human mouse all
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Genomic context

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See ST3GAL6 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
14
Annotation release Status Assembly Chr Location
100 current CAS_Tse_1.0 (GCF_013100865.1) 1 NC_048298.1 (151345563..151431050)

Chromosome 1 - NC_048298.1Genomic Context describing neighboring genes Neighboring gene transfer RNA histidin (anticodon GUG) Neighboring gene coproporphyrinogen oxidase Neighboring gene U5 spliceosomal RNA Neighboring gene collagen type VIII alpha 1 chain Neighboring gene discoidin, CUB and LCCL domain containing 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_048298.1 Chromosome 1 Reference CAS_Tse_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The Embryonic Transcriptome of the Red-Eared Slider Turtle (Trachemys scripta). Kaplinsky NJ, et al. PLoS One, 2013. PMID 23840449, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables beta-galactoside alpha-2,3-sialyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glycolipid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
type 2 lactosamine alpha-2,3-sialyltransferase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Trachemys scripta elegans Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CAS_Tse_1.0 Primary Assembly

Genomic

  1. NC_048298.1 Reference CAS_Tse_1.0 Primary Assembly

    Range
    151345563..151431050
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034789858.1 → XP_034645749.1  type 2 lactosamine alpha-2,3-sialyltransferase isoform X1

  2. XM_034789848.1 → XP_034645739.1  type 2 lactosamine alpha-2,3-sialyltransferase isoform X1

  3. XM_034789866.1 → XP_034645757.1  type 2 lactosamine alpha-2,3-sialyltransferase isoform X1

  4. XM_034789881.1 → XP_034645772.1  type 2 lactosamine alpha-2,3-sialyltransferase isoform X3

  5. XM_034789874.1 → XP_034645765.1  type 2 lactosamine alpha-2,3-sialyltransferase isoform X2

Nucleotide Protein
Heading Accession and Version

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