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INAVA innate immunity activator [ Trachemys scripta elegans ]

Gene ID: 117876069, updated on 19-Mar-2024

Summary

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Gene symbol
INAVA
Gene description
innate immunity activator
Gene type
protein coding
RefSeq status
MODEL
Organism
Trachemys scripta elegans (sub-species: elegans)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Testudinoidea; Emydidae; Trachemys
Orthologs
human mouse all
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Genomic context

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See INAVA in Genome Data Viewer
Location:
chromosome: 4
Exon count:
13
Annotation release Status Assembly Chr Location
100 current CAS_Tse_1.0 (GCF_013100865.1) 4 NC_048301.1 (138675102..138709198)

Chromosome 4 - NC_048301.1Genomic Context describing neighboring genes Neighboring gene protein FAM107B-like Neighboring gene G protein-coupled receptor 25 Neighboring gene phospholipid transfer protein C2CD2L-like Neighboring gene zinc finger protein 850-like Neighboring gene zinc finger protein 135-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_048301.1 Chromosome 4 Reference CAS_Tse_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The Embryonic Transcriptome of the Red-Eared Slider Turtle (Trachemys scripta). Kaplinsky NJ, et al. PLoS One, 2013. PMID 23840449, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in adherens junction maintenance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of protein ubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
innate immunity activator protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Trachemys scripta elegans Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CAS_Tse_1.0 Primary Assembly

Genomic

  1. NC_048301.1 Reference CAS_Tse_1.0 Primary Assembly

    Range
    138675102..138709198
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034767816.1 → XP_034623707.1  innate immunity activator protein isoform X4

  2. XM_034767817.1 → XP_034623708.1  innate immunity activator protein isoform X4

  3. XM_034767812.1 → XP_034623703.1  innate immunity activator protein isoform X1

  4. XM_034767814.1 → XP_034623705.1  innate immunity activator protein isoform X2

  5. XM_034767815.1 → XP_034623706.1  innate immunity activator protein isoform X3

RNA

  1. XR_004645417.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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