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CILK1 ciliogenesis associated kinase 1 [ Trachemys scripta elegans ]

Gene ID: 117875232, updated on 19-Mar-2024

Summary

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Gene symbol
CILK1
Gene description
ciliogenesis associated kinase 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Trachemys scripta elegans (sub-species: elegans)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Testudinoidea; Emydidae; Trachemys
Orthologs
human mouse all
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Genomic context

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See CILK1 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
15
Annotation release Status Assembly Chr Location
100 current CAS_Tse_1.0 (GCF_013100865.1) 3 NC_048300.1 (159846905..159887912)

Chromosome 3 - NC_048300.1Genomic Context describing neighboring genes Neighboring gene glial cells missing transcription factor 1 Neighboring gene F-box protein 9 Neighboring gene glutathione S-transferase 3-like Neighboring gene uncharacterized LOC117875235 Neighboring gene glutathione S-transferase-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_048300.1 Chromosome 3 Reference CAS_Tse_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The Embryonic Transcriptome of the Red-Eared Slider Turtle (Trachemys scripta). Kaplinsky NJ, et al. PLoS One, 2013. PMID 23840449, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein serine/threonine kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cilium assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intracellular signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intraciliary transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein phosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cilium IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
serine/threonine-protein kinase ICK

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Trachemys scripta elegans Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CAS_Tse_1.0 Primary Assembly

Genomic

  1. NC_048300.1 Reference CAS_Tse_1.0 Primary Assembly

    Range
    159846905..159887912
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034766338.1 → XP_034622229.1  serine/threonine-protein kinase ICK

  2. XM_034766341.1 → XP_034622232.1  serine/threonine-protein kinase ICK

  3. XM_034766339.1 → XP_034622230.1  serine/threonine-protein kinase ICK

  4. XM_034766343.1 → XP_034622234.1  serine/threonine-protein kinase ICK

  5. XM_034766340.1 → XP_034622231.1  serine/threonine-protein kinase ICK

RNA

  1. XR_004645232.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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