U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

MEIS1 Meis homeobox 1 [ Trachemys scripta elegans ]

Gene ID: 117874279, updated on 19-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
MEIS1
Gene description
Meis homeobox 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Trachemys scripta elegans (sub-species: elegans)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Testudinoidea; Emydidae; Trachemys
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See MEIS1 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
14
Annotation release Status Assembly Chr Location
100 current CAS_Tse_1.0 (GCF_013100865.1) 3 NC_048300.1 (18067693..18193581)

Chromosome 3 - NC_048300.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC117874278 Neighboring gene uncharacterized LOC117874733 Neighboring gene uncharacterized LOC117874282 Neighboring gene ETAA1 activator of ATR kinase

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_048300.1 Chromosome 3 Reference CAS_Tse_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. The Embryonic Transcriptome of the Red-Eared Slider Turtle (Trachemys scripta). Kaplinsky NJ, et al. PLoS One, 2013. PMID 23840449, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription activator activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in angiogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in animal organ morphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in brain development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in embryonic pattern specification IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in eye development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in hemopoiesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of cell population proliferation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
homeobox protein Meis1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Trachemys scripta elegans Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CAS_Tse_1.0 Primary Assembly

Genomic

  1. NC_048300.1 Reference CAS_Tse_1.0 Primary Assembly

    Range
    18067693..18193581
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034764231.1 → XP_034620122.1  homeobox protein Meis1 isoform X1

  2. XM_034764233.1 → XP_034620124.1  homeobox protein Meis1 isoform X3

    Conserved Domains (2) summary
    cd00086
    Location:276 → 329
    homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
    pfam07271
    Location:365 → 442
    Cytadhesin_P30; Cytadhesin P30/P32

  3. XM_034764232.1 → XP_034620123.1  homeobox protein Meis1 isoform X2

    Conserved Domains (3) summary
    TIGR01628
    Location:326 → 460
    PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
    pfam05920
    Location:290 → 329
    Homeobox_KN; Homeobox KN domain
    pfam16493
    Location:108 → 192
    Meis_PKNOX_N; N-terminal of Homeobox Meis and PKNOX1

  4. XM_034764234.1 → XP_034620125.1  homeobox protein Meis1 isoform X4

    Conserved Domains (2) summary
    cd00086
    Location:276 → 329
    homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
    pfam07271
    Location:340 → 415
    Cytadhesin_P30; Cytadhesin P30/P32

  5. XM_034764240.1 → XP_034620131.1  homeobox protein Meis1 isoform X10

  6. XM_034764236.1 → XP_034620127.1  homeobox protein Meis1 isoform X6

  7. XM_034764238.1 → XP_034620129.1  homeobox protein Meis1 isoform X8

    Conserved Domains (1) summary
    cd00086
    Location:276 → 329
    homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.

  8. XM_034764237.1 → XP_034620128.1  homeobox protein Meis1 isoform X7

    Conserved Domains (2) summary
    pfam05920
    Location:290 → 329
    Homeobox_KN; Homeobox KN domain
    pfam16493
    Location:108 → 192
    Meis_PKNOX_N; N-terminal of Homeobox Meis and PKNOX1

  9. XM_034764239.1 → XP_034620130.1  homeobox protein Meis1 isoform X9

  10. XM_034764235.1 → XP_034620126.1  homeobox protein Meis1 isoform X5

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.