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ZBTB44 zinc finger and BTB domain containing 44 [ Trachemys scripta elegans ]

Gene ID: 117868465, updated on 19-Mar-2024

Summary

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Gene symbol
ZBTB44
Gene description
zinc finger and BTB domain containing 44
Gene type
protein coding
RefSeq status
MODEL
Organism
Trachemys scripta elegans (sub-species: elegans)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Testudinoidea; Emydidae; Trachemys
Orthologs
human mouse all
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Genomic context

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See ZBTB44 in Genome Data Viewer
Location:
chromosome: 21
Exon count:
8
Annotation release Status Assembly Chr Location
100 current CAS_Tse_1.0 (GCF_013100865.1) 21 NC_048318.1 (6595273..6657334, complement)

Chromosome 21 - NC_048318.1Genomic Context describing neighboring genes Neighboring gene ST14 transmembrane serine protease matriptase Neighboring gene dispanin subfamily A member 2b-like Neighboring gene ADAM metallopeptidase with thrombospondin type 1 motif 8 Neighboring gene ADAM metallopeptidase with thrombospondin type 1 motif 15

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_048318.1 Chromosome 21 Reference CAS_Tse_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The Embryonic Transcriptome of the Red-Eared Slider Turtle (Trachemys scripta). Kaplinsky NJ, et al. PLoS One, 2013. PMID 23840449, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger and BTB domain-containing protein 44

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Trachemys scripta elegans Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CAS_Tse_1.0 Primary Assembly

Genomic

  1. NC_048318.1 Reference CAS_Tse_1.0 Primary Assembly

    Range
    6595273..6657334 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034754396.1 → XP_034610287.1  zinc finger and BTB domain-containing protein 44 isoform X2

    Conserved Domains (5) summary
    COG5048
    Location:383 → 449
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:401 → 421
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00020
    Location:489 → 511
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd18228
    Location:13 → 130
    BTB_POZ_ZBTB44; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 44 (ZBTB44)
    pfam13465
    Location:413 → 438
    zf-H2C2_2; Zinc-finger double domain

  2. XM_034754393.1 → XP_034610284.1  zinc finger and BTB domain-containing protein 44 isoform X1

  3. XM_034754395.1 → XP_034610286.1  zinc finger and BTB domain-containing protein 44 isoform X2

    Conserved Domains (5) summary
    COG5048
    Location:383 → 449
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:401 → 421
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00020
    Location:489 → 511
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd18228
    Location:13 → 130
    BTB_POZ_ZBTB44; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 44 (ZBTB44)
    pfam13465
    Location:413 → 438
    zf-H2C2_2; Zinc-finger double domain

  4. XM_034754397.1 → XP_034610288.1  zinc finger and BTB domain-containing protein 44 isoform X3

Nucleotide Protein
Heading Accession and Version

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