U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC117850736 tRNA (guanine(26)-N(2))-dimethyltransferase [ Setaria viridis ]

Gene ID: 117850736, updated on 24-Apr-2024

Summary

Go to the top of the page Help
Gene symbol
LOC117850736
Gene description
tRNA (guanine(26)-N(2))-dimethyltransferase
Locus tag
SEVIR_3G294400v2
Gene type
protein coding
RefSeq status
MODEL
Organism
Setaria viridis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC117850736 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
6
Annotation release Status Assembly Chr Location
100 current Setaria_viridis_v2.0 (GCF_005286985.1) 3 NC_048265.1 (26020904..26024268)

Chromosome 3 - NC_048265.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC117847601 Neighboring gene transcription repressor OFP1-like Neighboring gene superoxide dismutase [Mn] 3.1, mitochondrial Neighboring gene uncharacterized LOC117847247

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_048265.1 Chromosome 3 Reference Setaria_viridis_v2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in tRNA N2-guanine methylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
tRNA (guanine(26)-N(2))-dimethyltransferase

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Setaria viridis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Setaria_viridis_v2.0 Primary Assembly

Genomic

  1. NC_048265.1 Reference Setaria_viridis_v2.0 Primary Assembly

    Range
    26020904..26024268
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034732596.1 → XP_034588487.1  tRNA (guanine(26)-N(2))-dimethyltransferase

    UniProtKB/TrEMBL
    A0A4U6VGR8
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases