U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC117845653 sulfoquinovosyl transferase SQD2-like [ Setaria viridis ]

Gene ID: 117845653, updated on 24-Apr-2024

Summary

Go to the top of the page Help
Gene symbol
LOC117845653
Gene description
sulfoquinovosyl transferase SQD2-like
Locus tag
SEVIR_2G003900v2
Gene type
protein coding
RefSeq status
MODEL
Organism
Setaria viridis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC117845653 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
9
Annotation release Status Assembly Chr Location
100 current Setaria_viridis_v2.0 (GCF_005286985.1) 2 NC_048264.1 (153719..157225, complement)

Chromosome 2 - NC_048264.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC117845652 Neighboring gene probable pyridoxal 5'-phosphate synthase subunit PDX1.1 Neighboring gene cytochrome P450 93G2-like

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_048264.1 Chromosome 2 Reference Setaria_viridis_v2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables UDP-sulfoquinovose:DAG sulfoquinovosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glycolipid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sulfolipid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast envelope IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
sulfoquinovosyl transferase SQD2-like

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Setaria viridis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Setaria_viridis_v2.0 Primary Assembly

Genomic

  1. NC_048264.1 Reference Setaria_viridis_v2.0 Primary Assembly

    Range
    153719..157225 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034726716.1 → XP_034582607.1  sulfoquinovosyl transferase SQD2-like

    UniProtKB/TrEMBL
    A0A4U6VQ76
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases