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LOC117837406 mitochondrial carnitine/acylcarnitine carrier-like protein [ Setaria viridis ]

Gene ID: 117837406, updated on 24-Apr-2024

Summary

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Gene symbol
LOC117837406
Gene description
mitochondrial carnitine/acylcarnitine carrier-like protein
Locus tag
SEVIR_9G317800v2
Gene type
protein coding
RefSeq status
MODEL
Organism
Setaria viridis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Genomic context

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See LOC117837406 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
3
Annotation release Status Assembly Chr Location
100 current Setaria_viridis_v2.0 (GCF_005286985.1) 9 NC_048271.1 (34990615..34994045)

Chromosome 9 - NC_048271.1Genomic Context describing neighboring genes Neighboring gene armadillo repeat-containing protein 7 Neighboring gene 60S ribosomal export protein NMD3 Neighboring gene mitochondrial carnitine/acylcarnitine carrier-like protein Neighboring gene transfer RNA methionine (anticodon CAU) Neighboring gene abscisic acid receptor PYL10-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_048271.1 Chromosome 9 Reference Setaria_viridis_v2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables L-ornithine transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mitochondrial L-ornithine transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
mitochondrial carnitine/acylcarnitine carrier-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Setaria viridis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Setaria_viridis_v2.0 Primary Assembly

Genomic

  1. NC_048271.1 Reference Setaria_viridis_v2.0 Primary Assembly

    Range
    34990615..34994045
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034717023.1 → XP_034572914.1  mitochondrial carnitine/acylcarnitine carrier-like protein

    UniProtKB/TrEMBL
    A0A4U6T264

  2. XM_034717022.1 → XP_034572913.1  mitochondrial carnitine/acylcarnitine carrier-like protein

    UniProtKB/TrEMBL
    A0A4U6T264
Nucleotide Protein
Heading Accession and Version

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