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pomgnt2 protein O-linked mannose N-acetylglucosaminyltransferase 2 (beta 1,4-) [ Hippoglossus hippoglossus (Atlantic halibut) ]

Gene ID: 117776224, updated on 19-Mar-2024

Summary

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Gene symbol
pomgnt2
Gene description
protein O-linked mannose N-acetylglucosaminyltransferase 2 (beta 1,4-)
See related
EnsemblRapid:ENSHHIG00000021004
Gene type
protein coding
RefSeq status
MODEL
Organism
Hippoglossus hippoglossus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Pleuronectidae; Hippoglossus
Orthologs
human zebrafish all
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Genomic context

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See pomgnt2 in Genome Data Viewer
Location:
chromosome: 16
Exon count:
2
Annotation release Status Assembly Chr Location
100 current fHipHip1.pri (GCF_009819705.1) 16 NC_047166.1 (19256628..19271018, complement)

Chromosome 16 - NC_047166.1Genomic Context describing neighboring genes Neighboring gene TGF-beta receptor type-2-like Neighboring gene golgi associated kinase 1A Neighboring gene SNF related kinase a Neighboring gene anoctamin 10a Neighboring gene abhydrolase domain containing 5a

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_047166.1 Chromosome 16 Reference fHipHip1.pri Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein O-acetylglucosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein O-linked mannosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein O-linked-mannose beta-1,4-N-acetylglucosaminyltransferase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Hippoglossus hippoglossus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fHipHip1.pri Primary Assembly

Genomic

  1. NC_047166.1 Reference fHipHip1.pri Primary Assembly

    Range
    19256628..19271018 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034609932.1 → XP_034465823.1  protein O-linked-mannose beta-1,4-N-acetylglucosaminyltransferase 2

    Conserved Domains (2) summary
    cd00063
    Location:504 → 602
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam04577
    Location:311 → 419
    DUF563; Protein of unknown function (DUF563)

  2. XM_034609933.1 → XP_034465824.1  protein O-linked-mannose beta-1,4-N-acetylglucosaminyltransferase 2

    Related
    ENSHHIP00000057522.1, ENSHHIT00000059466.1
    Conserved Domains (2) summary
    cd00063
    Location:504 → 602
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam04577
    Location:311 → 419
    DUF563; Protein of unknown function (DUF563)
Nucleotide Protein
Heading Accession and Version

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