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sgcd sarcoglycan, delta (dystrophin-associated glycoprotein) [ Hippoglossus hippoglossus (Atlantic halibut) ]

Gene ID: 117774837, updated on 19-Mar-2024

Summary

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Gene symbol
sgcd
Gene description
sarcoglycan, delta (dystrophin-associated glycoprotein)
See related
EnsemblRapid:ENSHHIG00000002725
Gene type
protein coding
RefSeq status
MODEL
Organism
Hippoglossus hippoglossus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Pleuronectidae; Hippoglossus
Orthologs
human zebrafish all
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Genomic context

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See sgcd in Genome Data Viewer
Location:
chromosome: 14
Exon count:
12
Annotation release Status Assembly Chr Location
100 current fHipHip1.pri (GCF_009819705.1) 14 NC_047164.1 (1223261..1424201, complement)

Chromosome 14 - NC_047164.1Genomic Context describing neighboring genes Neighboring gene rho GTPase-activating protein 7 Neighboring gene nuclear factor 7, brain-like Neighboring gene uncharacterized LOC117774838 Neighboring gene tripartite motif-containing protein 16-like Neighboring gene E3 ubiquitin/ISG15 ligase TRIM25-like Neighboring gene tripartite motif-containing protein 16-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_047164.1 Chromosome 14 Reference fHipHip1.pri Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cardiac muscle tissue development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
delta-sarcoglycan

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Hippoglossus hippoglossus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fHipHip1.pri Primary Assembly

Genomic

  1. NC_047164.1 Reference fHipHip1.pri Primary Assembly

    Range
    1223261..1424201 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034607496.1 → XP_034463387.1  delta-sarcoglycan isoform X2

    Conserved Domains (1) summary
    pfam04790
    Location:22 → 279
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  2. XM_034607495.1 → XP_034463386.1  delta-sarcoglycan isoform X1

    Related
    ENSHHIP00000006066.1, ENSHHIT00000006355.1
    Conserved Domains (1) summary
    pfam04790
    Location:23 → 280
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  3. XM_034607498.1 → XP_034463389.1  delta-sarcoglycan isoform X3

Nucleotide Protein
Heading Accession and Version

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