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LOC117774527 polypeptide N-acetylgalactosaminyltransferase 10-like [ Hippoglossus hippoglossus (Atlantic halibut) ]

Gene ID: 117774527, updated on 14-Dec-2023

Summary

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Gene symbol
LOC117774527
Gene description
polypeptide N-acetylgalactosaminyltransferase 10-like
See related
EnsemblRapid:ENSHHIG00000002857
Gene type
protein coding
RefSeq status
MODEL
Organism
Hippoglossus hippoglossus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Pleuronectidae; Hippoglossus
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Genomic context

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See LOC117774527 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
14
Annotation release Status Assembly Chr Location
100 current fHipHip1.pri (GCF_009819705.1) 14 NC_047164.1 (1717709..1767602)

Chromosome 14 - NC_047164.1Genomic Context describing neighboring genes Neighboring gene family with sequence similarity 114 member A2 Neighboring gene microfibrillar-associated protein 3-like Neighboring gene uncharacterized LOC117774595 Neighboring gene apoptosis regulator BAX-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_047164.1 Chromosome 14 Reference fHipHip1.pri Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polypeptide N-acetylgalactosaminyltransferase 10-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Hippoglossus hippoglossus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fHipHip1.pri Primary Assembly

Genomic

  1. NC_047164.1 Reference fHipHip1.pri Primary Assembly

    Range
    1717709..1767602
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034607019.1 → XP_034462910.1  polypeptide N-acetylgalactosaminyltransferase 10-like

    Conserved Domains (2) summary
    cd02510
    Location:148 → 443
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:459 → 587
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain

  2. XM_034607020.1 → XP_034462911.1  polypeptide N-acetylgalactosaminyltransferase 10-like

    Related
    ENSHHIP00000006636.1, ENSHHIT00000006925.1
    Conserved Domains (2) summary
    cd02510
    Location:148 → 443
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:459 → 587
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
Nucleotide Protein
Heading Accession and Version

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