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ext1b exostosin glycosyltransferase 1b [ Hippoglossus hippoglossus (Atlantic halibut) ]

Gene ID: 117770079, updated on 19-Mar-2024

Summary

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Gene symbol
ext1b
Gene description
exostosin glycosyltransferase 1b
See related
EnsemblRapid:ENSHHIG00000008038
Gene type
protein coding
RefSeq status
MODEL
Organism
Hippoglossus hippoglossus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Pleuronectidae; Hippoglossus
Orthologs
zebrafish all
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Genomic context

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See ext1b in Genome Data Viewer
Location:
chromosome: 11
Exon count:
11
Annotation release Status Assembly Chr Location
100 current fHipHip1.pri (GCF_009819705.1) 11 NC_047161.1 (5250325..5356950)

Chromosome 11 - NC_047161.1Genomic Context describing neighboring genes Neighboring gene double-strand-break repair protein rad21 homolog A-like Neighboring gene sterile alpha motif domain containing 12 Neighboring gene uncharacterized LOC117770110 Neighboring gene mediator complex subunit 30 Neighboring gene solute carrier family 30 member 8

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_047161.1 Chromosome 11 Reference fHipHip1.pri Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
exostosin-1b

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Hippoglossus hippoglossus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fHipHip1.pri Primary Assembly

Genomic

  1. NC_047161.1 Reference fHipHip1.pri Primary Assembly

    Range
    5250325..5356950
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034599125.1 → XP_034455016.1  exostosin-1b

    Related
    ENSHHIP00000021466.1, ENSHHIT00000021875.1
    Conserved Domains (2) summary
    pfam03016
    Location:104 → 390
    Exostosin; Exostosin family
    pfam09258
    Location:474 → 719
    Glyco_transf_64; Glycosyl transferase family 64 domain
Nucleotide Protein
Heading Accession and Version

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