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LOC117767866 VIP36-like protein [ Hippoglossus hippoglossus (Atlantic halibut) ]

Gene ID: 117767866, updated on 19-Jun-2024

Summary

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Gene symbol
LOC117767866
Gene description
VIP36-like protein
See related
EnsemblRapid:ENSHHIG00000001825
Gene type
protein coding
RefSeq status
MODEL
Organism
Hippoglossus hippoglossus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Pleuronectidae; Hippoglossus
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Genomic context

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See LOC117767866 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
9
Annotation release Status Assembly Chr Location
100 current fHipHip1.pri (GCF_009819705.1) 9 NC_047159.1 (25504214..25513519)

Chromosome 9 - NC_047159.1Genomic Context describing neighboring genes Neighboring gene TM2 domain containing 2 Neighboring gene T-box transcription factor TBX2-like Neighboring gene leukocyte surface antigen CD53-like Neighboring gene uncharacterized LOC117767926

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_047159.1 Chromosome 9 Reference fHipHip1.pri Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables D-mannose binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in Golgi organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endoplasmic reticulum organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in COPII-coated ER to Golgi transport vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum-Golgi intermediate compartment IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
VIP36-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Hippoglossus hippoglossus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fHipHip1.pri Primary Assembly

Genomic

  1. NC_047159.1 Reference fHipHip1.pri Primary Assembly

    Range
    25504214..25513519
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034595830.1 → XP_034451721.1  VIP36-like protein

    Related
    ENSHHIP00000003980.1, ENSHHIT00000004246.1
    Conserved Domains (1) summary
    cl14058
    Location:56 → 307
    lectin_L-type; legume lectins

  2. XM_034595831.1 → XP_034451722.1  VIP36-like protein

    Conserved Domains (1) summary
    cl14058
    Location:56 → 307
    lectin_L-type; legume lectins
Nucleotide Protein
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