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ndst3 N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3 [ Hippoglossus hippoglossus (Atlantic halibut) ]

Gene ID: 117765843, updated on 19-Mar-2024

Summary

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Gene symbol
ndst3
Gene description
N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3
See related
EnsemblRapid:ENSHHIG00000018223
Gene type
protein coding
RefSeq status
MODEL
Organism
Hippoglossus hippoglossus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Pleuronectidae; Hippoglossus
Orthologs
zebrafish all
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Genomic context

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See ndst3 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
15
Annotation release Status Assembly Chr Location
100 current fHipHip1.pri (GCF_009819705.1) 1 NC_047151.1 (17744620..17788521)

Chromosome 1 - NC_047151.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC117761393 Neighboring gene SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3 Neighboring gene UDP glycosyltransferase 8 Neighboring gene serine protease 12 Neighboring gene methyltransferase 14, N6-adenosine-methyltransferase non-catalytic subunit

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_047151.1 Chromosome 1 Reference fHipHip1.pri Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables [heparan sulfate]-glucosamine N-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables deacetylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Hippoglossus hippoglossus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fHipHip1.pri Primary Assembly

Genomic

  1. NC_047151.1 Reference fHipHip1.pri Primary Assembly

    Range
    17744620..17788521
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034592391.1 → XP_034448282.1  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 4 isoform X2

    Related
    ENSHHIP00000050944.1, ENSHHIT00000052043.1

  2. XM_034592383.1 → XP_034448274.1  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 4 isoform X1

    Related
    ENSHHIP00000050967.1, ENSHHIT00000052116.1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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