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LOC117763374 carbohydrate sulfotransferase 1-like [ Hippoglossus hippoglossus (Atlantic halibut) ]

Gene ID: 117763374, updated on 14-Dec-2023

Summary

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Gene symbol
LOC117763374
Gene description
carbohydrate sulfotransferase 1-like
See related
EnsemblRapid:ENSHHIG00000014928
Gene type
protein coding
RefSeq status
MODEL
Organism
Hippoglossus hippoglossus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Pleuronectidae; Hippoglossus
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Genomic context

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See LOC117763374 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
9
Annotation release Status Assembly Chr Location
100 current fHipHip1.pri (GCF_009819705.1) 6 NC_047156.1 (27070760..27082289, complement)

Chromosome 6 - NC_047156.1Genomic Context describing neighboring genes Neighboring gene anoctamin-1-like Neighboring gene uncharacterized LOC117763375 Neighboring gene uncharacterized LOC117763723 Neighboring gene paired box protein Pax-6-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_047156.1 Chromosome 6 Reference fHipHip1.pri Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables N-acetylglucosamine 6-O-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables keratan sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in N-acetylglucosamine metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in keratan sulfate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
carbohydrate sulfotransferase 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Hippoglossus hippoglossus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fHipHip1.pri Primary Assembly

Genomic

  1. NC_047156.1 Reference fHipHip1.pri Primary Assembly

    Range
    27070760..27082289 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034588438.1 → XP_034444329.1  carbohydrate sulfotransferase 1-like

    Related
    ENSHHIP00000041888.1, ENSHHIT00000042384.1

  2. XM_034588439.1 → XP_034444330.1  carbohydrate sulfotransferase 1-like

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases