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xylt1 xylosyltransferase I [ Hippoglossus hippoglossus (Atlantic halibut) ]

Gene ID: 117763285, updated on 19-Mar-2024

Summary

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Gene symbol
xylt1
Gene description
xylosyltransferase I
See related
EnsemblRapid:ENSHHIG00000011888
Gene type
protein coding
RefSeq status
MODEL
Organism
Hippoglossus hippoglossus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Pleuronectidae; Hippoglossus
Orthologs
human zebrafish all
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Genomic context

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See xylt1 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
11
Annotation release Status Assembly Chr Location
100 current fHipHip1.pri (GCF_009819705.1) 1 NC_047151.1 (7747639..7831093, complement)

Chromosome 1 - NC_047151.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC117760393 Neighboring gene notum pectinacetylesterase 2 Neighboring gene ribosomal protein S15a Neighboring gene uncharacterized LOC117763296 Neighboring gene nodal modulator Neighboring gene transmembrane channel like 5

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_047151.1 Chromosome 1 Reference fHipHip1.pri Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein xylosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chondroitin sulfate proteoglycan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heparan sulfate proteoglycan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
xylosyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Hippoglossus hippoglossus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fHipHip1.pri Primary Assembly

Genomic

  1. NC_047151.1 Reference fHipHip1.pri Primary Assembly

    Range
    7747639..7831093 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034588285.1 → XP_034444176.1  xylosyltransferase 1

    Related
    ENSHHIP00000033128.1, ENSHHIT00000033548.1
    Conserved Domains (2) summary
    pfam12529
    Location:599 → 781
    Xylo_C; Xylosyltransferase C terminal
    cl27418
    Location:314 → 566
    Branch; Core-2/I-Branching enzyme
Nucleotide Protein
Heading Accession and Version

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